BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0030.p (122 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310698|ref|YP_003774790.1| AraC family two-component hybri... 94 3e-21 gi|300313830|ref|YP_003777922.1| response regulator protein [Her... 79 1e-16 gi|300310849|ref|YP_003774941.1| two component transcription reg... 78 2e-16 gi|300312677|ref|YP_003776769.1| two component hybrid sensor his... 78 3e-16 gi|300311032|ref|YP_003775124.1| chemotaxis CheY protein [Herbas... 77 5e-16 >gi|300310698|ref|YP_003774790.1| AraC family two-component hybrid sensor/regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 262 Score = 94.0 bits (232), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 43/110 (39%), Positives = 67/110 (60%) Query: 4 KKILVVDDSATDRYLLTEILSRHGFEVETADNGEEAFGKIQRNRPELVLMDVVMPGKNGF 63 ++ILVVDD+ DR LL+ L RHG + +G++ + K Q RP+L+LMD+ MPG +G Sbjct: 17 QRILVVDDAEDDRTLLSGFLLRHGVRLYIGTDGQDGYRKAQTVRPDLILMDIRMPGYDGL 76 Query: 64 QITRQMTRDPSLRDIPIMMCSIKDQETDRIWALSQGACDYVVKPVDAQEL 113 R + + S R+IP++ S +++ LS GA DY+ KP D +E+ Sbjct: 77 TSCRLLKANTSTRNIPVIFLSAATTTEEKVTGLSTGAVDYITKPFDFEEV 126 >gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 79.0 bits (193), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 5/117 (4%) Query: 4 KKILVVDDSATDRYLLTEILSRHGFEVETADNGEEAFGKIQRNRPEL--VLMDVVMPGKN 61 +KIL+VDD R LL L ++ +EV A +G + QR EL V++DV++P + Sbjct: 3 RKILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGATFLAEFQRLADELSLVILDVMLPDTD 62 Query: 62 GFQITRQMTRDPSLRDIPIMMCSIKDQETDRIWALSQGACDYVVKPVDAQELLSKIE 118 GF + + + R ++P++M + ETDR+ L GA DY+ KP +ELL++I+ Sbjct: 63 GFALCKAVRRKS---NVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIK 116 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 78.2 bits (191), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 65/113 (57%), Gaps = 3/113 (2%) Query: 5 KILVVDDSATDRYLLTEILSRHGFEVETADNGEEAFGKIQRNRPELVLMDVVMPGKNGFQ 64 ILVVDD R LL E L +G TA NG E ++ +R +L+++D+ +PG++G Sbjct: 9 HILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPGEDGLT 68 Query: 65 ITRQMTRDPSLRDIPIMMCSIKDQETDRIWALSQGACDYVVKPVDAQELLSKI 117 + R + S +P++M + + + DRI L GA DY+ KP + +EL ++I Sbjct: 69 LCRNLRATSS---VPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARI 118 >gi|300312677|ref|YP_003776769.1| two component hybrid sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 1160 Score = 77.8 bits (190), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 42/120 (35%), Positives = 72/120 (60%), Gaps = 6/120 (5%) Query: 4 KKILVVDDSATDRYLLTEILSRHGFEVETADNGEEAFGKIQRN--RPE----LVLMDVVM 57 ++ILVV+D + + L+ +L G +VE A NG EA +QR+ +P+ LVLMD++M Sbjct: 1035 RRILVVEDDVRNIFALSSVLEPKGMKVEIARNGREALQALQRSQDKPDAPIDLVLMDIMM 1094 Query: 58 PGKNGFQITRQMTRDPSLRDIPIMMCSIKDQETDRIWALSQGACDYVVKPVDAQELLSKI 117 P +G R++ + + +PI+ + K + D+ L+ GA DY+ KP+D ++LLS + Sbjct: 1095 PEMDGLTAMREIRKQAVWKRLPIIALTAKAMKDDQEKCLAAGANDYIAKPLDVEKLLSLV 1154 Score = 67.0 bits (162), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 3/116 (2%) Query: 6 ILVVDDSATDRYLLTEILSRHGFEVETADNGEEAFGKIQRNRPELVLMDVVMPGKNGFQI 65 ILV++D A +L ++ GF+ + E + RP +LMD+ +P +G + Sbjct: 769 ILVIEDDAAFAMILRDLAREMGFQCVVTHSANEGVAAAEMYRPSAILMDMNLPDFSGLGV 828 Query: 66 TRQMTRDPSLRDIPIMMCSIKDQETDRIWALSQGACDYVVKPVDAQELLSKIEEKE 121 Q+ R+P R IP+ + S+ D + A+ +GA Y +KPV +EL+ I + E Sbjct: 829 LDQIKRNPKTRHIPVHVVSVADYSHE---AMERGAIGYALKPVQREELIGAIRKLE 881 >gi|300311032|ref|YP_003775124.1| chemotaxis CheY protein [Herbaspirillum seropedicae SmR1] Length = 123 Score = 76.6 bits (187), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 63/115 (54%), Gaps = 1/115 (0%) Query: 3 IKKILVVDDSATDRYLLTEILSRHGFEVETADNGEEAFGKIQRNRPELVLMDVVMPGKNG 62 +K+IL+VDD+AT R IL + VE A NG E K +L ++D+ MP +G Sbjct: 1 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG 60 Query: 63 FQITRQMTRDPSLRDIPIMMCSIKDQETDRIWALSQGACDYVVKPVDAQELLSKI 117 + RQ+ +P L P +M S + Q DR+ A GA DY+VKPV +LL + Sbjct: 61 YGFLRQLRGEP-LVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHV 114 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 348,942 Number of extensions: 12284 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 164 Number of HSP's successfully gapped: 49 Length of query: 122 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 48 Effective length of database: 1,269,480 Effective search space: 60935040 Effective search space used: 60935040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)