BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0029.p
         (173 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313135|ref|YP_003777227.1| twitching motility protein [Her...   102   2e-23

>gi|300313135|ref|YP_003777227.1| twitching motility protein
           [Herbaspirillum seropedicae SmR1]
          Length = 194

 Score =  102 bits (254), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 90/170 (52%), Gaps = 10/170 (5%)

Query: 12  RLHEFQARLLERMDAARDGSGMRDSRLGVMIGDRRCLVDLREAGEIVTL--VAMTRVPLS 69
            L  FQA L+ERM A  D       RL V IG + CL+ L    EIV L   ++T VP +
Sbjct: 25  NLQSFQASLIERMQAC-DHESQSSRRLAVAIGAQACLIPLSHTSEIVPLDGQSLTPVPAT 83

Query: 70  RDWYLGLANVRGKLIGVVDLDCFLGGPRQTPGKESRVLVVSAALSGNTGFLLSRVLGLRH 129
           R W+LGL N+RG L+G+ DL    G P Q+ G  S  LV++  L+   G L+S VLGLR 
Sbjct: 84  RPWFLGLLNLRGNLVGIADLAALSGAPAQSTGPGSHALVLAPTLAAQCGLLISAVLGLRD 143

Query: 130 IQEMAEQPRSDDGRKC-------YLDGDRNEWVEISLAGIVEDPRFLQVG 172
           I EM    ++DD R         Y D     W E+ LA + +   FLQVG
Sbjct: 144 ISEMTPISKNDDDRIELPTVNGRYKDKGGTCWDELDLAALAKHEAFLQVG 193


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.142    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 607,473
Number of extensions: 25568
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,245,805
Effective search space: 117105670
Effective search space used: 117105670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)