BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0028.p
         (523 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313134|ref|YP_003777226.1| twitching motility transmembran...   536   e-153

>gi|300313134|ref|YP_003777226.1| twitching motility transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 753

 Score =  536 bits (1380), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/439 (63%), Positives = 339/439 (77%)

Query: 42  RLPFIGRQSLRAQTRILLMLLILALLSMFFFLWLGSKHYIHVSLQAHITSDLVMHSQRIG 101
           RLP++ R +LR QTRILL +L L+L  +F FLWLGS+ YIH +LQ HI SDLVMHSQR+G
Sbjct: 58  RLPYLHRFALRTQTRILLGILALSLAGLFLFLWLGSRLYIHATLQTHIASDLVMHSQRLG 117

Query: 102 KAVPNAIQGNREAFSQLTESRKEFNQGLNVLMLGGEYQGYTILKPEPEMHTVLTDVQKIW 161
           KAVPNAIQGN EAF QL +SR EFN+GL +L  GG YQG TI  PEP M   L  + ++W
Sbjct: 118 KAVPNAIQGNPEAFVQLAQSRVEFNRGLLLLTSGGTYQGNTIGLPEPAMKPALESITRLW 177

Query: 162 DHTDKAASTILKLQPELTGFGVTLARLRLLSHNLQDMSEQISMLQSLGGNSPREVAAAAQ 221
             +D AA  IL LQ ELTGFG TL RL  L   + D+SEQISMLQS    +PRE+ AA+Q
Sbjct: 178 RRSDLAAENILALQKELTGFGATLKRLNQLLPVMLDLSEQISMLQSQSRPTPREMNAASQ 237

Query: 222 LIFLTLRLSRSANEFLTSEGVNPETAFLLGKDVNTFRDIIDGFLNGSEILGLNAVRDKDM 281
           L+ LTLRL RSANEFLTSEGVNPETAF+LGKD+  F D +    +G+E+L L    D D+
Sbjct: 238 LVMLTLRLGRSANEFLTSEGVNPETAFMLGKDITAFGDQLTSLRDGNEMLRLRPASDPDL 297

Query: 282 RDKLNELEKVFSEYQSLVANILGNLQNFIAAKQSEQLVFLENETLKQRLTVLQNDYRQAQ 341
           R+KL+ELE+VF++YQ  +A ILG+LQNFIAAKQ+E+LVF+ENETLK++LT LQ+DYR A 
Sbjct: 298 REKLDELERVFAQYQPQIAGILGHLQNFIAAKQAERLVFVENETLKRQLTELQDDYRIAL 357

Query: 342 ESRAWTFWIMLLSMALALVCGVGIAWVQLQSSRRNAEEAELRRQEAEGQRLHAQQQEERA 401
           +SR+WTFW ML++M +AL+  +GIA VQLQSSR NA  AE RRQ+AE QR  AQQ+EE+A
Sbjct: 358 KSRSWTFWAMLVTMVMALLSAIGIALVQLQSSRNNAAAAEARRQQAELQRQLAQQEEEKA 417

Query: 402 MRTNAINQAAILRLMNELQKVADGDLTVHTTVSEDITGAIADSVNYTVEALRGLVGQVTH 461
           MR N + Q AILRLM ELQKVADGDLTV TTVS+D+TGAIADSVN+TVEALR LV QVT 
Sbjct: 418 MRVNHLTQTAILRLMTELQKVADGDLTVRTTVSDDVTGAIADSVNHTVEALRALVEQVTQ 477

Query: 462 TASQVAAASNQVRDNAQEL 480
            AS+V+ +S QVR    EL
Sbjct: 478 MASKVSQSSEQVRGTTTEL 496


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,263,784
Number of extensions: 43457
Number of successful extensions: 265
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 433
Effective length of database: 1,193,720
Effective search space: 516880760
Effective search space used: 516880760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)