BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0025.p
         (232 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313134|ref|YP_003777226.1| twitching motility transmembran...   141   4e-35
gi|300311235|ref|YP_003775327.1| seryl-tRNA synthetase [Herbaspi...    78   8e-16

>gi|300313134|ref|YP_003777226.1| twitching motility transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 753

 Score =  141 bits (356), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/90 (78%), Positives = 82/90 (91%)

Query: 96  MLEMSIQITDVSLSANKSADVARHSVVVAERGAKAVEDAVKGMNEIREQIQETSKRIKRL 155
           MLEMS+QIT +S+SA++SADVARH+V+ AERG +AVE+A+K MN IREQIQETS RI RL
Sbjct: 514 MLEMSMQITGISVSADESADVARHAVLAAERGERAVENAIKAMNGIREQIQETSGRITRL 573

Query: 156 GESSQEIGEITELISDITEQTNVLALNAAI 185
           GESSQ IGEITELISDITE+TNVLALNAAI
Sbjct: 574 GESSQMIGEITELISDITERTNVLALNAAI 603



 Score = 65.9 bits (159), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/39 (84%), Positives = 35/39 (89%)

Query: 1   VAEEVQRLAERSSAATRQIGALVRMIQADTHDAVAAMEK 39
           VAEEVQ LAERSSAATR+IGALVRMIQADT D V AM+K
Sbjct: 618 VAEEVQHLAERSSAATREIGALVRMIQADTRDVVVAMDK 656


>gi|300311235|ref|YP_003775327.1| seryl-tRNA synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 433

 Score = 77.8 bits (190), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 33/37 (89%), Positives = 35/37 (94%)

Query: 53  NFGAAKTFDIEVWLPAQNTYREISSVSNCEAFQARRI 89
            FGAAKT+DIEVWLPAQ TYREISSVSNCEAFQARR+
Sbjct: 335 GFGAAKTYDIEVWLPAQKTYREISSVSNCEAFQARRM 371


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.123    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 520,861
Number of extensions: 16111
Number of successful extensions: 253
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 3
Length of query: 232
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,231,600
Effective search space: 184740000
Effective search space used: 184740000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)