BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0017.p (210 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313131|ref|YP_003777223.1| LysR family transcription regul... 209 1e-55 gi|300313102|ref|YP_003777194.1| LysR family transcription regul... 68 4e-13 gi|300309393|ref|YP_003773485.1| LysR family transcription regul... 62 2e-11 gi|300312750|ref|YP_003776842.1| LysR family transcription regul... 58 5e-10 >gi|300313131|ref|YP_003777223.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 307 Score = 209 bits (533), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 108/165 (65%), Positives = 131/165 (79%), Gaps = 3/165 (1%) Query: 31 EISQASSEHQALDVEEGRADLGLARTPILRKHPHLETITLYQEKLVVAVSLQHPLAQREV 90 EISQA SE+QA ++ EG AD+GLAR PILR +P+L + LY+E+LV AV H LAQR+ Sbjct: 125 EISQAPSEYQAREIVEGSADIGLARLPILRANPNLASTVLYRERLVAAVPAGHRLAQRQE 184 Query: 91 IDIAELRDELFVSMPHRERGGLSYLVAERCIAHGFFPRPARATSRKASLLSLVNANFGIA 150 ++IAELRDE FV++PHR+RGGLSYLVAERCIAHGF+PR ARATSRK SLLSLVNA FGIA Sbjct: 185 VEIAELRDEFFVTVPHRDRGGLSYLVAERCIAHGFYPRVARATSRKNSLLSLVNAGFGIA 244 Query: 151 VVPDSMRAIAV-AGVHFIDIREPDFQSAVVLMMRRDAPVXEMAGQ 194 VVP SM + ++ AGV F +++PDF S V L+ RRDAP M GQ Sbjct: 245 VVPQSMASTSLAAGVSFPALKDPDFHSEVALLRRRDAPA--MVGQ 287 >gi|300313102|ref|YP_003777194.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 68.2 bits (165), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 11/169 (6%) Query: 41 ALDVEEGRADLGLARTPILRKHPHLETITLYQEKLVVAVSLQHPLAQREVIDIAELRDEL 100 A D+E+ + D+G+ P L++ T+Y E L+ + H LA R+ I AEL ++ Sbjct: 134 ATDIEDEKIDVGIMYRP--EDCRRLDSHTIYAEPLLAVLPRDHRLAGRQSISAAELAEDA 191 Query: 101 FVSMPHRERGGLSYLVAERCIAHGFFPRPARATSRKASLLSLVNANFGIAVVPDSMRAIA 160 F+S+P + L+ + C HGF PR T+ + ++++LV G+A+VP SM+A+ Sbjct: 192 FISIPRMIAPVVYDLIQQHCQLHGFRPRIVLETNLQQTIVNLVGEGLGVALVPTSMQAMH 251 Query: 161 VAGVHFID-IREPDFQSAVVLMMRRDAPV--------XEMAGQVGCGNQ 200 + F I P + AV+ P E+ G++ GNQ Sbjct: 252 LDTTVFKPLIGAPMVEVAVIWNKDNTNPCIRTFAETAVEVWGRMQPGNQ 300 >gi|300309393|ref|YP_003773485.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 296 Score = 62.4 bits (150), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 78/155 (50%), Gaps = 1/155 (0%) Query: 32 ISQASSEHQALDVEEGRADLGLARTPILRKHPHLETITLYQEKLVVAVSLQHPLAQREVI 91 +S+ +E D+ + D R + L + L EKL VA+ HPLA+R+ + Sbjct: 125 LSEGITEQLLADIAASQLDAAFVRI-VTTPSAALGVVELPAEKLKVALPRSHPLARRKSL 183 Query: 92 DIAELRDELFVSMPHRERGGLSYLVAERCIAHGFFPRPARATSRKASLLSLVNANFGIAV 151 + +L E F+ +P + L + C A GF P+ + + S ++LV + GI++ Sbjct: 184 RLQDLASENFIMVPRGKGSALYDSIFSACQAAGFDPQVIQLAPQLTSAINLVASGLGISI 243 Query: 152 VPDSMRAIAVAGVHFIDIREPDFQSAVVLMMRRDA 186 VP+++ + +A V +++I EP ++ + L R + Sbjct: 244 VPEAIEQVQLAQVRYVEIVEPAPRAQLSLAYHRQS 278 >gi|300312750|ref|YP_003776842.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 58.2 bits (139), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 8/156 (5%) Query: 34 QASSEHQALDVEEG-RADLGLARTPILRKHPHLETITLYQEKLVVAVSLQHPLA---QRE 89 + S+ ++ ++ G R DL R+P+ L T+ +E +V A+ + HPL +R+ Sbjct: 144 EESNTNELIEALRGKRLDLAFVRSPV-GDSGGLTIETMLEEDMVAALPIDHPLVDGGKRK 202 Query: 90 VIDIAELRDELFVSMPHRERG-GLSYLVAERCIAHGFFPRPARATSRKASLLSLVNANFG 148 I + L +E F+ M R G GL + C A GF P+ + + S LSLV A G Sbjct: 203 SIALHALAEESFI-MTRRPNGPGLYDTIIAACHAAGFSPQVIQEARKNLSTLSLVAAGVG 261 Query: 149 IAVVPDSMRAIAVAGVHFIDIR-EPDFQSAVVLMMR 183 + V+P SM + GV ++ + PD ++ + L R Sbjct: 262 VTVIPASMTRVNAEGVVYLKLTGAPDLKAPLHLAYR 297 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 606,192 Number of extensions: 24024 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 5 Length of query: 210 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 129 Effective length of database: 1,236,335 Effective search space: 159487215 Effective search space used: 159487215 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)