BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0016.p
         (186 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DM...   167   4e-43
gi|300313130|ref|YP_003777222.1| thiosulfate sulfurtransferase [...    90   1e-19

>gi|300313129|ref|YP_003777221.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 305

 Score =  167 bits (424), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 79/116 (68%), Positives = 100/116 (86%), Gaps = 2/116 (1%)

Query: 71  GCVAIGRIPFWHAHTGKGLALLVTIGLTATLAQIAMTRAYRLGNTLVTANLQYTGIVFAS 130
           G VA GR+P WH+H+ +G AL++ IGLTATLAQIAMTRAYRLGNTLVTANLQYTGIVF+S
Sbjct: 192 GSVATGRVPLWHSHSWQGAALVIMIGLTATLAQIAMTRAYRLGNTLVTANLQYTGIVFSS 251

Query: 131 LWGLFIWNDAPGWMGWAGIGIILMSGVVSTFYNQRSQQQSRQSSNLPAIDPIATEV 186
           L+G+ +WNDAPGW+GW G+G+IL SG+++T++N RS Q + +  NLP +DPIATEV
Sbjct: 252 LFGVLVWNDAPGWLGWLGMGVILASGLLATYHNHRSSQIAAR--NLPKVDPIATEV 305


>gi|300313130|ref|YP_003777222.1| thiosulfate sulfurtransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 285

 Score = 90.1 bits (222), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 47/65 (72%)

Query: 1   MQELGVGKGTQVVAYDAHGGMFAARLWWLLRWVGHVQVAVLDGGLPAWQAQGGELSTVVA 60
           M+ LG+   TQVVAYDAHGGMFAARLWWLLRW+GH  VAVLDGG+ AWQA G  LS    
Sbjct: 84  MRALGINNDTQVVAYDAHGGMFAARLWWLLRWIGHSDVAVLDGGMAAWQAIGEPLSAETP 143

Query: 61  IGRIP 65
               P
Sbjct: 144 APATP 148


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 644,487
Number of extensions: 28101
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 186
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,241,070
Effective search space: 131553420
Effective search space used: 131553420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)