BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0012.p
         (303 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313126|ref|YP_003777218.1| geranyltranstransferase [Herbas...   441   e-125
gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase ...    99   6e-22

>gi|300313126|ref|YP_003777218.1| geranyltranstransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 311

 Score =  441 bits (1135), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/299 (76%), Positives = 253/299 (84%), Gaps = 7/299 (2%)

Query: 11  FTDWMQHVQAGMEGTLDAYLPAVTEIPARLHQAMRYTALDGGKRVRPLLVYAAGELFEAP 70
           F  WM  VQ+GME  L+ +LP+ + +PARLH+AMRYTA+DGGKRVRPLLVYAAGELF+ P
Sbjct: 12  FAQWMGQVQSGMEEVLNRFLPSASVVPARLHEAMRYTAMDGGKRVRPLLVYAAGELFDTP 71

Query: 71  EELLGRAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVHVRYDEPTALLVGDALQAQAF 130
             LL RAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVH+RYDE TALLVGDALQAQAF
Sbjct: 72  RALLERAAAAVEMIHVYSLVHDDMPCMDDDALRRGKPTVHIRYDEATALLVGDALQAQAF 131

Query: 131 AVLSGNVEEQ-------YAARQLKMLHLLAQAAGSTGMCGGQAIDLASVGMTLSLAELEQ 183
             L+  +E +         ARQL+M+ LLA+AAGS GMCGGQAIDLASVGMTLSLAELEQ
Sbjct: 132 DTLAAPLESEAGSADAGLPARQLRMVKLLAEAAGSVGMCGGQAIDLASVGMTLSLAELEQ 191

Query: 184 MHRLKTGALLRAAILLGACSGKHLTVVEQAALEAYSCPISLAFQVVDDILDATADSATLG 243
           MHRLKTGALLRAA+LLGA  GK LT  E AAL+ Y+  I LAFQVVDDILDATADSATLG
Sbjct: 192 MHRLKTGALLRAAVLLGALGGKALTAAESAALDDYARAIGLAFQVVDDILDATADSATLG 251

Query: 244 KTAGKDAADNKPTYVSILGLSESQALAEKLRNDAHKALEQFGNKARRLHELADLIVQRK 302
           KTAGKDAADNKPTYVSILGL+ESQALA +L+ DAH+AL  FG KARRL ELADLIVQRK
Sbjct: 252 KTAGKDAADNKPTYVSILGLAESQALAGRLQADAHEALAPFGGKARRLRELADLIVQRK 310


>gi|300309704|ref|YP_003773796.1| octaprenyldiphosphate synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score = 98.6 bits (244), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 118/227 (51%), Gaps = 20/227 (8%)

Query: 34  TEIPARLHQAMRYTALDGGKRVRPLLVYAAGELFEAPEELLGRAAAAVEMIHVYSLVHDD 93
           +E+P  ++Q   Y    GGKR+RP+LV      F    E     AA +E IH  +L+HDD
Sbjct: 14  SEVPL-VNQVAEYIISAGGKRLRPVLVVLIANAFGYKGEHHHSLAAVIEFIHTATLLHDD 72

Query: 94  MPCMDDDALRRGKPTVHVRYDEPTALLVGDALQAQAFAVLSGNVEEQYAARQLKMLHLLA 153
           +  +D+ +LRRGK T +  +    ++LVGD L ++AF ++        A    +++ ++A
Sbjct: 73  V--VDESSLRRGKQTANAMFGNAASVLVGDFLYSRAFQMM-------VAVGNPRVMEIVA 123

Query: 154 QAAGSTGMCGGQAIDLASV-GMTLSLAELEQMHRLKTGALLRAAILLGACSGKHLTVVEQ 212
            A  +  +  G+ + L ++    +      Q+ R KT  L  AA  +GA     +   ++
Sbjct: 124 DA--TNVIAEGEVLQLLNMHNPDVDENGYLQVIRSKTAKLFEAASQIGAL----IAGADE 177

Query: 213 AALEA---YSCPISLAFQVVDDILDATADSATLGKTAGKDAADNKPT 256
           A +EA   Y   I  AFQ++DD+LD + +SA +GK  G D  + KPT
Sbjct: 178 AGIEAAAEYGRSIGTAFQLIDDVLDYSGNSAEIGKNVGDDLREGKPT 224


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 898,887
Number of extensions: 36799
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,217,395
Effective search space: 265392110
Effective search space used: 265392110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)