BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0011.p
         (657 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313125|ref|YP_003777217.1| 1-deoxy-D-xylulose 5-phosphate ...   733   0.0  
gi|300310438|ref|YP_003774530.1| transketolase, C-terminal subun...    60   7e-10
gi|300310747|ref|YP_003774839.1| transketolase [Herbaspirillum s...    59   1e-09

>gi|300313125|ref|YP_003777217.1| 1-deoxy-D-xylulose 5-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 621

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/393 (87%), Positives = 376/393 (95%)

Query: 6   MLNTINSPADLRQLPRTQLKPLADELRAFILDSVSKTGGHLSSNLGTVELTIALHYVFNT 65
           +LNTIN PADLR+L R QLKPLA+ELR F+LDSVSKTGGHLSSNLGTVELTIALHYVFNT
Sbjct: 2   LLNTINDPADLRRLSRHQLKPLAEELRGFLLDSVSKTGGHLSSNLGTVELTIALHYVFNT 61

Query: 66  PEDRIVWDVGHQTYPHKILTGRRDQMSTLRQLDGISGFPRRVESEHDTFGTAHSSTSISA 125
           PEDR+VWDVGHQTYPHKILTGRR++M TLRQ +GISGFPRR+ES++DTFGTAHSSTSISA
Sbjct: 62  PEDRVVWDVGHQTYPHKILTGRRERMDTLRQQEGISGFPRRIESQYDTFGTAHSSTSISA 121

Query: 126 ALGMALAAKTKGEDRHAIAVIGDGAMTAGMAFEAMNNAGICEDVNLLVILNDNDMSISPP 185
           ALGMALAA+T+G DRHAIAVIGDGAMTAGMAFEA+NNAG+ EDV LLVILNDNDMSISPP
Sbjct: 122 ALGMALAARTQGSDRHAIAVIGDGAMTAGMAFEALNNAGVHEDVKLLVILNDNDMSISPP 181

Query: 186 VGALNRYLARLMSGQFYAKAKNVGKSMLPGPVLELAKRFEEHAKGMIVPATMFEEFGFNY 245
           VGALNRYLARLMSG+FYA+A++VGKS+LPGPVLELAKR EEHAKGM+VPATMFEEFGFNY
Sbjct: 182 VGALNRYLARLMSGKFYARARDVGKSVLPGPVLELAKRLEEHAKGMVVPATMFEEFGFNY 241

Query: 246 IGPIDGHDLDSLIPTLQNLKNLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPAEGI 305
           IGPIDGHDLDSL+PTLQNLK+LKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNP+EGI
Sbjct: 242 IGPIDGHDLDSLVPTLQNLKHLKGPQFLHVVTKKGQGYKLAEADPVLYHGPGKFNPSEGI 301

Query: 306 KPAAASKQTYTQVFGEWLCDMAAQDKTLVGITPAMREGSGMVRFEQKFPDRYYDVGIAEQ 365
           KP+A  K TYT+VFG+WLCDMAA D  LVGITPAMREGSGMV FE+KFP+RYYDVGIAEQ
Sbjct: 302 KPSAGGKLTYTKVFGDWLCDMAAADDKLVGITPAMREGSGMVDFEKKFPNRYYDVGIAEQ 361

Query: 366 HAVTFAAGMACEGLKPVVAIYSTFMQRAYDQLI 398
           HAVTFAAGMACEG+KPVVAIYSTF+QRAYDQLI
Sbjct: 362 HAVTFAAGMACEGMKPVVAIYSTFLQRAYDQLI 394


>gi|300310438|ref|YP_003774530.1| transketolase, C-terminal subunit
           [Herbaspirillum seropedicae SmR1]
          Length = 334

 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)

Query: 308 AAASKQTYTQVFGEWLCDMAAQDKTLVGITPAMREGSGMVRFEQKFPDRYYDVGIAEQHA 367
           AA  ++     FG+ L D AA    +VG+T  + + + +  F++ +P+R++ +G+AEQ  
Sbjct: 21  AAEGQRVQAAPFGKALVDYAADRPEIVGLTADLAKYTDLHLFQKAYPERFFQMGMAEQLL 80

Query: 368 VTFAAGMACEGLKPVVAIYSTF-MQRAYD 395
           +  A GMA EGL P    Y+ F  +RAYD
Sbjct: 81  MAAAGGMAKEGLVPFATTYAVFATRRAYD 109


>gi|300310747|ref|YP_003774839.1| transketolase [Herbaspirillum
           seropedicae SmR1]
          Length = 664

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 120/301 (39%), Gaps = 78/301 (25%)

Query: 27  LADELRAFILDSVSKT-GGHLSSNLGTVELTIAL---HYVFNTPE------DRIVWDVGH 76
           +A+ +RA  +D+V K   GH    +G  E+ +AL   HY  N         DR V   GH
Sbjct: 10  MANAIRALAMDAVQKANSGHPGMPMGMAEIAVALWAKHYRHNPANPHWANRDRFVLSNGH 69

Query: 77  QT---YPHKILTG---RRDQMSTLRQLDG-ISGFPRRVESEHDTFGTAHSS----TSISA 125
            +   Y    LTG     + + + RQL    +G P      H T G   ++      I+ 
Sbjct: 70  GSMLQYALLHLTGYDLSMEDIKSFRQLHSKTAGHPEV----HITPGVETTTGPLGQGITN 125

Query: 126 ALGMALAAKTKGE----------DRHAIAVIGDGAMTAGMAFEAMNNAGICEDVNLLVIL 175
           A+GMALA K              D +  A +GDG +  G++ EA + AG+     L+V+ 
Sbjct: 126 AVGMALAEKLLAAEFNKPGLAVVDHYTYAFVGDGCLMEGISHEACSLAGVLNLSKLIVLY 185

Query: 176 NDNDMSISPPVGALNRYLARLMSGQFYAKAKNVGKSMLPGPVLELAKRFEEHAKGMIVPA 235
           +DN +SI   V            G F        K   P       KR            
Sbjct: 186 DDNGISIDGHV-----------EGWF--------KDDTP-------KR------------ 207

Query: 236 TMFEEFGFNYIGPIDGHDLDSLIPTLQNLKNLKGPQFLHVVTKKGQGY-KLAEADPVLYH 294
             FE +G+N I  +DGH ++++   +   K    P  +   T  G+G   LA  D V  H
Sbjct: 208 --FEAYGWNVIPAVDGHSVEAVSAAIHQAKLADKPTLICCRTVIGKGSPNLAGTDKV--H 263

Query: 295 G 295
           G
Sbjct: 264 G 264


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,988,152
Number of extensions: 84166
Number of successful extensions: 234
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 3
Length of query: 657
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 566
Effective length of database: 1,188,985
Effective search space: 672965510
Effective search space used: 672965510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)