BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0007.p
         (413 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313119|ref|YP_003777211.1| glycolate oxidase iron-sulfur s...   722   0.0  

>gi|300313119|ref|YP_003777211.1| glycolate oxidase iron-sulfur
           subunit oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 414

 Score =  722 bits (1863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/410 (82%), Positives = 371/410 (90%)

Query: 1   MQTNLADFIRDTNEGKEADAILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE 60
           MQTNLADFIR+T  G+EAD+ILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE
Sbjct: 1   MQTNLADFIRNTQAGQEADSILRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLE 60

Query: 61  GKQATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVEDQVPRPLGQRIVRTTLK 120
           GK ATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVE+QVPRPL QR++RT LK
Sbjct: 61  GKPATAATQSHLDRCLTCRNCESTCPSGVQYGRLVDIGRKVVEEQVPRPLSQRVMRTALK 120

Query: 121 TLLPNKWLFNPAMKAGQLVRPLLPQKLQNKVPPKQDAGQWPTRTHARKMLMLDGCVQPAM 180
            L+P KW+F PAMKAGQ++RPLLP+ LQNKVP  Q+AG WPTRTHAR+ML L+GCVQP+M
Sbjct: 121 ELVPRKWIFRPAMKAGQMLRPLLPKLLQNKVPLPQEAGAWPTRTHARQMLYLEGCVQPSM 180

Query: 181 SPNINSSTARVLDALGIEMVVPPKAGCCGAIRYHLNDQDGGLADMRRNIDAWWPYVDGSA 240
           SPNINS+TARVLDALG+++  PPKAGCCGAIRYH+NDQ+GGL DMRRNIDAWWPY++G  
Sbjct: 181 SPNINSATARVLDALGVQLFAPPKAGCCGAIRYHMNDQEGGLEDMRRNIDAWWPYIEGRD 240

Query: 241 GFTVEAIVMNASGCGATVKEYGHLLQHDAAYAAKAHRISQLTRDISEILPDFEAELAGKL 300
           G   + IVMNASGCG+TVKEYGHLLQHD  YA KA RIS +TRDISEILP+FE  L  KL
Sbjct: 241 GIRADTIVMNASGCGSTVKEYGHLLQHDPVYAEKARRISHMTRDISEILPEFEEALKHKL 300

Query: 301 KGKIGKRVAYHPPCTLQHGQKIRGKVEQILGSAGVDVKLCADSHLCCGSAGTYSVLQPEL 360
           K   GKRVAYHPPCTLQHGQKIRGKVE IL +AGVDV+LCADSHLCCGSAGTYS+LQPEL
Sbjct: 301 KDFNGKRVAYHPPCTLQHGQKIRGKVEGILRAAGVDVQLCADSHLCCGSAGTYSILQPEL 360

Query: 361 SYRLRDNKLGNLQATQPDMIVSGNIGCLTHLQSGTDTPVRHWIELLDAAL 410
           SYRLRDNK+  LQAT PDMIV+GNIGC+THLQSGTDTPVRHWIELLDAAL
Sbjct: 361 SYRLRDNKISKLQATDPDMIVTGNIGCVTHLQSGTDTPVRHWIELLDAAL 410


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,322,474
Number of extensions: 55337
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,203,190
Effective search space: 391036750
Effective search space used: 391036750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)