BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0006.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313117|ref|YP_003777209.1| hypothetical protein Hsero_3823...   231   3e-62
gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469...    63   9e-12

>gi|300313117|ref|YP_003777209.1| hypothetical protein Hsero_3823
           [Herbaspirillum seropedicae SmR1]
          Length = 152

 Score =  231 bits (588), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 122/139 (87%)

Query: 16  DNDIQVEEGTLGKLVMARLKPNQDLTESVEALCRQYGMQTAIVRGAIGSLIDAHLEYATP 75
           D+ I VE+G LGKLVMARLKPNQDLTESVEALCRQ+GM  AIVRGAIGSLIDAHL+YATP
Sbjct: 14  DDHIHVEQGQLGKLVMARLKPNQDLTESVEALCRQHGMDKAIVRGAIGSLIDAHLQYATP 73

Query: 76  TGWREMEINGPGVEILNVFGEIGFAGGKPHAHPLQGVVADVDGKIFAGRFVRGANLSFIT 135
           TG REME+NGPGVEILNVFGEIGFA G   AHPLQGVVAD +G+IFAGRFVRGANLSFIT
Sbjct: 74  TGLREMEVNGPGVEILNVFGEIGFADGPASAHPLQGVVADTEGRIFAGRFVRGANLSFIT 133

Query: 136 IEITLQEWIPKQVQQALHA 154
           IEITLQEWI  +  + L A
Sbjct: 134 IEITLQEWIAVKQSEPLPA 152


>gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469
           [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score = 63.2 bits (152), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 63/115 (54%), Gaps = 12/115 (10%)

Query: 28  KLVMARLKPNQDLTESVEALCRQYGMQTAIVRGAIGSLIDAHLEYATPTGWREMEINGPG 87
           ++V+AR++P+QDLT +VEA C ++GM  AIVRG++GS+I A  +       R +E     
Sbjct: 185 RVVLARIRPDQDLTMAVEAACAEHGMANAIVRGSVGSIIGAEFDDG-----RVLEDR--A 237

Query: 88  VEILNVFGEIGFAGGKPHAHPLQGVVADVDGKIFAGRFVRGANLSFITIEITLQE 142
            EIL   GE+     +     L+  + +  G++  G   RG N   I  E+ LQE
Sbjct: 238 TEILIRAGEVRQGRAR-----LEIGLINPQGQVCEGVLARGCNPVLICFELVLQE 287


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 497,071
Number of extensions: 20733
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)