BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0005.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313116|ref|YP_003777208.1| hypothetical protein Hsero_3822...   308   2e-85
gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469...    55   3e-09

>gi|300313116|ref|YP_003777208.1| hypothetical protein Hsero_3822
           [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score =  308 bits (789), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 149/178 (83%), Positives = 164/178 (92%), Gaps = 3/178 (1%)

Query: 13  GFVEVRKFLHAGQQSYPRTLDLEAEPAEELRITLQPGTKVGEALREVLKQYSARGQRGGV 72
           GF+EVRKFLHAGQ SYPRTLDLEA+PAEELRITLQ GT VG ALR VL +Y   GQRGGV
Sbjct: 5   GFLEVRKFLHAGQPSYPRTLDLEADPAEELRITLQAGTLVGPALRRVLARY---GQRGGV 61

Query: 73  GRMCGGTARKLHYHRIENTRDANRPYDYGPPHVLEGVITFVTGAITVGQNQEGKVLLHCH 132
           GR+CGGTAR+LHYHRIE T DA+RPYDYGPPHVLEGVI+FVTGAIT+GQN +GKVLLHCH
Sbjct: 62  GRLCGGTARRLHYHRIEQTGDASRPYDYGPPHVLEGVISFVTGAITIGQNADGKVLLHCH 121

Query: 133 AGFLDGDGSIHGGHLLLDTVEVGDDPLIIRLCLFSQGAFVVNSDEETLFSLLHPTPME 190
           +GF+DGDG++HGGHLLLDTVEVGDDPLI+RLCLFS+ AFVVNSDEET FSLLHPTPME
Sbjct: 122 SGFIDGDGTLHGGHLLLDTVEVGDDPLILRLCLFSRSAFVVNSDEETHFSLLHPTPME 179


>gi|300311784|ref|YP_003775876.1| hypothetical protein Hsero_2469
           [Herbaspirillum seropedicae SmR1]
          Length = 288

 Score = 55.5 bits (132), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 70/170 (41%), Gaps = 6/170 (3%)

Query: 18  RKFLHAGQQSYPRTLDLEAEPAEELRITLQPGTKVGEALREVLKQYSARGQRGGVGRMCG 77
           R   H G     R + L A PA +L  TL+ G  + +A+   L   S  G  GG  R   
Sbjct: 9   RTVRHPGAPDPQRIVSL-AGPAMQLDFTLEAGRNLRDAISIPL---SRAGLEGGTVRFGQ 64

Query: 78  GTARKLHYHRIENTRDANRPYDYGPPHVLEGVITFVTGAITVGQNQEGKVLLHCHAGFLD 137
               +LH+       D      Y  PH +E          T G+ ++G+  +HCHA + D
Sbjct: 65  LAIAELHFLMPALAVDDQHAAFYSAPHAMEEGTLIDYACATYGR-KDGEPFVHCHAVWRD 123

Query: 138 GDGSIHGGHLLLDTVEVGDDPLIIRLCLFSQGAFVVNSDEETLFSLLHPT 187
             G   GGHL+++   VG D       L          D ET F+L +PT
Sbjct: 124 RQGQRQGGHLMMEKTLVGADTPAQAWGLHD-ATMATRYDPETNFTLFYPT 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 599,423
Number of extensions: 23196
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)