BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0026.0002.p
         (184 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313115|ref|YP_003777207.1| long-chain-fatty-acid-CoA ligas...   226   7e-61

>gi|300313115|ref|YP_003777207.1| long-chain-fatty-acid-CoA ligase
           [Herbaspirillum seropedicae SmR1]
          Length = 556

 Score =  226 bits (577), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 109/140 (77%), Positives = 119/140 (85%), Gaps = 1/140 (0%)

Query: 1   MNLGRLLSDVARRFPDEPGLIFGDGTADGKGDKIATWKQINDRVDTLAHSLQKLGVTKGD 60
           MNLGRLLSDVARRFPDEPGLI   G ADG  D++  W++IN RVD LAH+L + GV KGD
Sbjct: 30  MNLGRLLSDVARRFPDEPGLILAQGAADGS-DRLIPWREINARVDALAHALTRRGVKKGD 88

Query: 61  KMLVHSRNNLQIFESAWAAFKLGMVWVPTNVRITPPEAAYLGQSSGASVMLYDRGFANYV 120
           KMLVHSRNN QIFESAWAAFK+G+VWVPTN RITPPEAAYLGQSSGA VMLYDRGFA YV
Sbjct: 89  KMLVHSRNNQQIFESAWAAFKMGVVWVPTNFRITPPEAAYLGQSSGACVMLYDRGFAQYV 148

Query: 121 DAVKEISPALKHVIALQDPR 140
           DAVK  SPAL+HV+AL D R
Sbjct: 149 DAVKAASPALEHVVALADAR 168


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 536,124
Number of extensions: 19977
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,241,070
Effective search space: 129071280
Effective search space used: 129071280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)