BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0077.p
         (192 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313445|ref|YP_003777537.1| cytochrome C oxidase assembly t...   337   4e-94

>gi|300313445|ref|YP_003777537.1| cytochrome C oxidase assembly
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  337 bits (864), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 159/189 (84%), Positives = 172/189 (91%)

Query: 4   SDKSDVSPERPERSLNRRMLGKLLVIAVLMFGFGYALIPVYKKICEVTGVNFLTPKDVTV 63
           S   D   ++ ER LNR ML KLLV+AVLMFGFGYALIPVY+KICEVTGVNFLTPKDVTV
Sbjct: 2   SQHDDPLQDQEERGLNRVMLRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTV 61

Query: 64  EAPSNSQIDKSRTVTIEFDGNSQGPWRFRPTVASMKVHPGEMTQVVYEVVNTQARSVDAQ 123
           EAP+N+QIDKSRT+T+EFDGN+QGPWRFRPTV SM+VHPGEMTQV YEVVNTQ+R+VDAQ
Sbjct: 62  EAPANTQIDKSRTITVEFDGNAQGPWRFRPTVTSMQVHPGEMTQVTYEVVNTQSRNVDAQ 121

Query: 124 AIPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPALPKDVTTITLSYTFFE 183
           AIPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDP LPKDVTTITLSYTFFE
Sbjct: 122 AIPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKDVTTITLSYTFFE 181

Query: 184 IGGQAKKAS 192
           I G+ K A 
Sbjct: 182 INGKDKTAG 190


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 541,793
Number of extensions: 19391
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,241,070
Effective search space: 138999840
Effective search space used: 138999840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)