BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0073.p
         (144 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313441|ref|YP_003777533.1| transmembrane cytochrome oxidas...   145   2e-36

>gi|300313441|ref|YP_003777533.1| transmembrane cytochrome oxidase
           complex biogenesis factor transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score =  145 bits (365), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/133 (57%), Positives = 91/133 (68%), Gaps = 4/133 (3%)

Query: 1   MPIRFRIRWIPLLATLIVAGIGVSLGQWQTRRGDEKEAIQAKMAVRQS-APAMTLENAAQ 59
           MP RFR R IP  A LIVA  G++LGQWQT R  EK+A+QA+M  R + AP   L    Q
Sbjct: 1   MPTRFRFRIIPFCAMLIVAAAGIALGQWQTHRAQEKQALQARMQARAAEAPLSALPPDDQ 60

Query: 60  VDAAQVEFRHVRLRGRFVPEWTTYLENRPYNGVPGFYVLMPFKITGSAASAVLIERGWAP 119
             + Q EFR V LRG+F+P+WT YLENRP+ G  GF+VL  FK  GS A AV++ RGWAP
Sbjct: 61  --SLQDEFRQVSLRGQFIPQWTLYLENRPHQGAVGFHVLTLFKPEGS-AQAVVVARGWAP 117

Query: 120 RDANDRTRVPAVP 132
           RDA DRTRVP  P
Sbjct: 118 RDAVDRTRVPQSP 130


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 470,544
Number of extensions: 17919
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 67
Effective length of database: 1,255,275
Effective search space: 84103425
Effective search space used: 84103425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)