BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0072.p
         (149 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313440|ref|YP_003777532.1| transmembrane protein [Herbaspi...   216   6e-58

>gi|300313440|ref|YP_003777532.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 188

 Score =  216 bits (550), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 98/143 (68%), Positives = 119/143 (83%)

Query: 1   VVAVCAAPMIASYFTYYVIKPESRTNYGTLLDPREYPIPPLGSATLDGKPAKLEDYKGKW 60
           VVAVCAAPMIASY TYYVIKP+SR NYG L+DPR+YPIP LGS  +DG PA L DY+GKW
Sbjct: 9   VVAVCAAPMIASYLTYYVIKPQSRNNYGALIDPRQYPIPDLGSRAIDGSPATLADYRGKW 68

Query: 61  VLLQVAGGDCDDACKTRLFAMRQLRLMQGKEMERIERVWLITDAKPLDTMLMREYDGTDM 120
           V+LQV GGDC + C+ +LF +RQLRLMQGKEMERIERVWL+TD +P++T+L+REYDGTD+
Sbjct: 69  VMLQVDGGDCAEPCRQKLFTLRQLRLMQGKEMERIERVWLVTDRQPIETLLLREYDGTDI 128

Query: 121 LRVDPKLLKAWLPVXQAAARIEH 143
           LRVD   L++WLPV    +  +H
Sbjct: 129 LRVDAGKLRSWLPVDAGTSVEDH 151


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 497,703
Number of extensions: 19060
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,255,275
Effective search space: 90379800
Effective search space used: 90379800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)