BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0069.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313438|ref|YP_003777530.1| protoheme IX farnesyltransferas...   359   e-101

>gi|300313438|ref|YP_003777530.1| protoheme IX farnesyltransferase
           (heme O synthase) transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 297

 Score =  359 bits (922), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/207 (83%), Positives = 193/207 (93%)

Query: 1   VAQTLMFSGVIGGMGMWVLYSLVNPLTMWLTLATFVGYAIIYTIILKPSTPQNIVIGGLS 60
           V QTL+FSGV+GG+GMWVLY+LVNPLTMWLT ATFVGYAIIYTI+LKP+T QNIVIGGL+
Sbjct: 91  VGQTLVFSGVLGGLGMWVLYNLVNPLTMWLTFATFVGYAIIYTIVLKPATSQNIVIGGLA 150

Query: 61  GAMPPALGWAAIANDVPMQAWILVLIIFIWTPPHFWALAMYRRDDYAKSGLPMLPITHGM 120
           GAMPPALGWAA+ANDVPMQAW+LV+IIFIWTPPHFWALAMYRRDDYAKSGLPMLPITHGM
Sbjct: 151 GAMPPALGWAAMANDVPMQAWVLVMIIFIWTPPHFWALAMYRRDDYAKSGLPMLPITHGM 210

Query: 121 KLTQFHILLYTIALIATSVLPFAVGMSGLIYLGMAIVLGLIFFHYSWQIYRHYTDLIARK 180
            +T+ H+L+YTIAL A S+LPFA+GMSGLIYLG A+VLG IFF YSWQ+YR YTDLIARK
Sbjct: 211 DVTKLHVLMYTIALFAVSLLPFAIGMSGLIYLGTAVVLGAIFFWYSWQMYRRYTDLIARK 270

Query: 181 AFTFSIIYLSILFAALLVDHYLLFRTF 207
           AF +SI+YLSILFA LLVDHY LFR+F
Sbjct: 271 AFAYSIVYLSILFAVLLVDHYFLFRSF 297


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.333    0.145    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 720,159
Number of extensions: 31049
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 2
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 128 (53.9 bits)