BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0059.p
         (252 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313429|ref|YP_003777521.1| zinc protease-like signal pepti...   289   2e-79
gi|300312757|ref|YP_003776849.1| Zn-dependent peptidase [Herbasp...    62   6e-11

>gi|300313429|ref|YP_003777521.1| zinc protease-like signal peptide
           protein [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  289 bits (739), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/221 (64%), Positives = 172/221 (77%), Gaps = 8/221 (3%)

Query: 31  QAQAALQIQSWSLPNGARVLFVXGGPLPALPEIASAAPQDLRISHPASQSHILIGMPALV 90
           QA+A     +  LP GA         LPALP + +    + RI+HPASQSHILIG PA+ 
Sbjct: 224 QARAIASALTRELPQGA--------ALPALPPVVAPKGSEERIAHPASQSHILIGAPAIQ 275

Query: 91  RGDPDFFALTVGNYILGGGGFVSRLTNEVREKRALTYSVYSYFSPLAQKGPFQIGLQTKQ 150
           RGDPDFFALTVGNY+LGGGGFVSRLT+EVREKR L+YSVYS FSPLAQ GPFQIGLQTK+
Sbjct: 276 RGDPDFFALTVGNYVLGGGGFVSRLTDEVREKRGLSYSVYSGFSPLAQPGPFQIGLQTKK 335

Query: 151 EQTAQALDVVRRTLADYLRDGPTAAELKAAKDNLIGGFALRIDNNRKILDNLAVIGYYGL 210
           EQTA+AL V R TL  ++++GPTAAELKAAKDNL GGFALRID+N K+L+NL+VIG+YGL
Sbjct: 336 EQTAEALRVTRVTLDKFMQEGPTAAELKAAKDNLAGGFALRIDSNAKLLENLSVIGFYGL 395

Query: 211 PLDYLDSWTANIGKVTVAQIRAAFTRKIALGQLSTVVVGEA 251
           PLDYLD W   I  V+V  +RAAF + +   +LST++VGE+
Sbjct: 396 PLDYLDHWIERIRAVSVQDVRAAFRKHVHPEELSTIIVGES 436


>gi|300312757|ref|YP_003776849.1| Zn-dependent peptidase
           [Herbaspirillum seropedicae SmR1]
          Length = 929

 Score = 61.6 bits (148), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 76/161 (47%), Gaps = 10/161 (6%)

Query: 93  DPDFFALTVGNYILGGGGFVSRLTNEVREKRALTYSVYS--YFSPLAQKGPFQIGLQTKQ 150
           DPD+ AL V N++LGG    SRL + VR++  L+Y +YS    + L   G   I      
Sbjct: 763 DPDYPALAVANFLLGGSSLKSRLADRVRQQDGLSYGIYSGLQVAALTDAGHLTIYAIAAP 822

Query: 151 EQTAQALDVVRRTLADYLRDGPTAAELKAAKDNLIGGFALRIDNNRKILDNLAVIGYYGL 210
           +   +    VR  +A  L+DG +  EL+ AK     G   + +  R   DN+A      +
Sbjct: 823 QNLDKVDAAVREEIALALKDGFSEEELQRAK----SGILQQRNQQRAGNDNVAATWTLLM 878

Query: 211 PLDYLDSWTANIGK----VTVAQIRAAFTRKIALGQLSTVV 247
             D    W   I +    +T+AQ+ AA  + +   +++TV+
Sbjct: 879 NQDRNFLWQQEIDRKLASLTLAQVNAALRKYVDPARMTTVI 919


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 799,315
Number of extensions: 34291
Number of successful extensions: 94
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 2
Length of query: 252
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,226,865
Effective search space: 207340185
Effective search space used: 207340185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)