BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0050.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC...   197   1e-52
gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC...    60   5e-11
gi|300313259|ref|YP_003777351.1| ABC transporter ATPase [Herbasp...    58   1e-10

>gi|300313365|ref|YP_003777457.1| organic solvents resistance ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 243

 Score =  197 bits (501), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 92/103 (89%), Positives = 100/103 (97%)

Query: 1   MYDEPFAGLDPISMGVTANLIRKLNDALGSTSILVSHDVNESFGIADYVYFLSEGKIVAQ 60
           MYDEPFAGLDPISMGVTANLIR+LNDALGSTSILVSHDVNESF IAD+VYFLS GKIVAQ
Sbjct: 139 MYDEPFAGLDPISMGVTANLIRRLNDALGSTSILVSHDVNESFAIADHVYFLSAGKIVAQ 198

Query: 61  GTPDEMRASQDPYVKQFVHAEADGPVPFHYPGRSLAEDVGLGG 103
           GTP+E+R+S DPYV+QFVHAEADGPVPFHYPG+SLAED+GLGG
Sbjct: 199 GTPEELRSSTDPYVRQFVHAEADGPVPFHYPGKSLAEDLGLGG 241


>gi|300312193|ref|YP_003776285.1| organic solvents resistance ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score = 59.7 bits (143), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 43/75 (57%)

Query: 3   DEPFAGLDPISMGVTANLIRKLNDALGSTSILVSHDVNESFGIADYVYFLSEGKIVAQGT 62
           DEP AGLDPIS      LI  L DALG T  LV+HD++  + I D +  LS  +++    
Sbjct: 181 DEPTAGLDPISAAAFDRLILTLRDALGLTVFLVTHDLDTLYAICDRIAVLSSRRVLVADR 240

Query: 63  PDEMRASQDPYVKQF 77
            + + A  D +++Q+
Sbjct: 241 IEAVAAYDDAWIRQY 255


>gi|300313259|ref|YP_003777351.1| ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 247

 Score = 58.2 bits (139), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 1   MYDEPFAGLDPISMGVTANLIRKLNDALGSTSILVSHDVNESFGIADYVYFLSEGKIVAQ 60
           + DEPFAG+DPI++     ++R L +  G   ++  H+V E+ GI D  Y +++G ++A 
Sbjct: 166 LLDEPFAGIDPIAVIEIQRIVRFLKER-GIGVLITDHNVRETLGICDRAYIINQGTVLAS 224

Query: 61  GTPDEMRASQ 70
           G P+E+ A++
Sbjct: 225 GNPEEIIANE 234


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 355,480
Number of extensions: 12770
Number of successful extensions: 153
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 3
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)