BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0047.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313362|ref|YP_003777454.1| surface lipoprotein (VacJ) tran...   373   e-105

>gi|300313362|ref|YP_003777454.1| surface lipoprotein (VacJ)
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 246

 Score =  373 bits (957), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/235 (74%), Positives = 206/235 (87%), Gaps = 3/235 (1%)

Query: 5   ARIAALAMVAA-LSGCA-TSQNPNDPLEGFNRAMFSFNDTVDKVALKPAAQAYQFVLPNF 62
           +R+ A+A+ AA ++GCA TS NPNDPLEGFNR MFSFNDTVDKVALKPAAQAY  V+P+ 
Sbjct: 12  SRLGAIALAAAVMTGCASTSNNPNDPLEGFNRTMFSFNDTVDKVALKPAAQAYDAVVPSP 71

Query: 63  VQTGIGNFFGNIGDLWSAVNQILQGRVETGVTSFMRVAVNTTFGLGGVLDVSTEARLPKQ 122
           VQ G+GNFFGNIGDLWS+VNQ+LQGR+E GV++FMRVA+NTTFGLGGVLDV+TEARLP++
Sbjct: 72  VQRGVGNFFGNIGDLWSSVNQLLQGRIEQGVSTFMRVAINTTFGLGGVLDVATEARLPRE 131

Query: 123 KSDFGQTLGKWGVGSGPYVVLPLLGPSTIRDTAALPADFYGDLWTYKKPVRWRNVGSVVR 182
           KSDFGQTLGKWGVGSGPYVVLP  GPST+RDTA +P D YGDLWTYK+P RWRNVG+VVR
Sbjct: 132 KSDFGQTLGKWGVGSGPYVVLPFFGPSTLRDTAGMPVDLYGDLWTYKRPTRWRNVGTVVR 191

Query: 183 VIDKRAQLLDASNLLEDAALDKYDFVRDTYLQSRQSQIDGTKDEQRGK-EEVVKP 236
           ++D+RAQLLDAS LLEDAALDKYDFVRD YLQ RQSQI+G     + + E  ++P
Sbjct: 192 IVDRRAQLLDASTLLEDAALDKYDFVRDAYLQRRQSQINGAGGSGKDRPENAIQP 246


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 691,459
Number of extensions: 29178
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)