BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0042.p
         (393 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313357|ref|YP_003777449.1| UDP-N-acetylglucosamine 1-carbo...   664   0.0  
gi|300313784|ref|YP_003777876.1| UDP-N-acetylglucosamine enolpyr...   170   2e-43

>gi|300313357|ref|YP_003777449.1| UDP-N-acetylglucosamine
           1-carboxyvinyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 416

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/419 (80%), Positives = 363/419 (86%), Gaps = 29/419 (6%)

Query: 1   MDKLLIRGGNRLSGDVVISGAKNAALPILCAGLLTADNLHLSNIPNLQDVSTMLKLMRQM 60
           MDKLLIRGG RLSGDV ISGAKNAALPILCA LLTAD+L LSN+P+LQDV T+  LM+QM
Sbjct: 1   MDKLLIRGGKRLSGDVTISGAKNAALPILCAALLTADDLVLSNVPHLQDVVTITGLMKQM 60

Query: 61  GLRIEQEAGSNKVTLNGGDITKLEAPYELVKTMRASILVLGPLLARFGEAKVSLPGGCAI 120
           GLR+ QE G +++ LNG DIT+ EAPYELVKTMRASILVLGPLLARFG+AKVSLPGGCAI
Sbjct: 61  GLRV-QENG-DQMVLNGNDITRPEAPYELVKTMRASILVLGPLLARFGQAKVSLPGGCAI 118

Query: 121 GSRPVDQHIKGLQAMGAEITIDAGYIYAKAKRLKGTRIVTDMITVTGTENLLMAAVLADG 180
           GSRPVDQHIKGLQAMGAEI I+ GYIYAKAKRLKG RIVTDMITVTGTENLLMAAVLADG
Sbjct: 119 GSRPVDQHIKGLQAMGAEIHIEGGYIYAKAKRLKGARIVTDMITVTGTENLLMAAVLADG 178

Query: 181 ETVLENAAREPEVSDLAQLLVAMGAKIEGIGTDRLVIQGVDKLHGASHTVIADRIETGTF 240
           ETVLENAAREPEV DLA LLV MGAKIEGIGTDRLVIQGV++LHGASH VIADRIETGTF
Sbjct: 179 ETVLENAAREPEVGDLANLLVKMGAKIEGIGTDRLVIQGVEQLHGASHEVIADRIETGTF 238

Query: 241 LCAVAAVGGDVTLRNTRSNLLDAALDKLREAGAILTTGEDWIRVQMARRPKAVSFRTTEY 300
           LCAVAA GGDVTLR TR+ LLDAALDKLR+AGAILT+GEDWIR+QMARRPKAVSFRTTEY
Sbjct: 239 LCAVAATGGDVTLRRTRAGLLDAALDKLRDAGAILTSGEDWIRIQMARRPKAVSFRTTEY 298

Query: 301 PGFPTDMQAQFMALNCIAEGTSHVTETIFEXRIFPHSL---------------------- 338
           PGFPTDMQAQFMALNCIA+GTSHVTETIFE R F H                        
Sbjct: 299 PGFPTDMQAQFMALNCIADGTSHVTETIFENR-FMHVQELNRLGTAIDVEGNTAIVTGVE 357

Query: 339 ----APVMATDLRASASLVIAGLAAQGETLIERIYHLDRGYDRMENKLSSIGAQIERVK 393
               APVMATDLRASASLVIAGLAAQGET++ERIYHLDRGYDRME KLS+IGA I+R+K
Sbjct: 358 KFIGAPVMATDLRASASLVIAGLAAQGETVVERIYHLDRGYDRMEAKLSAIGADIQRIK 416


>gi|300313784|ref|YP_003777876.1| UDP-N-acetylglucosamine
           enolpyruvyl transferase [Herbaspirillum seropedicae
           SmR1]
          Length = 433

 Score =  170 bits (431), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 200/434 (46%), Gaps = 44/434 (10%)

Query: 1   MDKLLIRGGNRLSGDVVISGAKNAALPILCAGLLTADNLHLSNIPNLQDVSTMLKLMRQM 60
           M  L++ GG  L GD++ S  KNA LPILCA LLT   L L  IP + DV  +L++ R +
Sbjct: 1   MSNLIVHGGRPLRGDIIPSANKNAVLPILCATLLTDQPLRLIGIPEITDVKKILEIFRVL 60

Query: 61  GLRIEQEAGSNKVTLNGGDITKLEAPYELVKTMRASILVLGPLLARFGEAKVSLP-GGCA 119
           G  +  +  S  + L+  D       + L + MR+SI+++ PLLARFG A++     GC 
Sbjct: 61  GSEVTVDYASGVLELHHRDTHFDPKLHHLPEEMRSSIMLVPPLLARFGVARLENDVKGCT 120

Query: 120 IGSRPVDQHIKGLQAMGAEITIDAGYIYAKAK-RLKGTRIVTDMITVTGTENLLMAAVLA 178
           +G R +D H++  Q  GA++      +  +   R++      D  +VT TEN ++ A  A
Sbjct: 121 LGVREIDPHVEVFQRFGAQVESSPDSLIIRTPGRMQANDHWLDYASVTTTENFVLCAASA 180

Query: 179 DGETVLENAAREPEVSDLAQLLVAMGAKIEGIGTDRLVIQGVDKLHGASHTVIADRIETG 238
           +G +VL NAA EP V +  + +  +G +IEG+GT R+ ++G   L G       D  E  
Sbjct: 181 EGTSVLTNAASEPHVQEFCRFMAMLGVQIEGLGTSRVSVRGGGPLGGGEFRFDEDFHEIA 240

Query: 239 TFLCAVAAVGGDVTLRNT---RSNLLDAALDKLREAGAILTTGEDWIRVQMARRPKAVSF 295
           TFL   A  GG V +RN+   +  L+D    K    G  +     W   +     K V  
Sbjct: 241 TFLAMGAITGGQVRVRNSAPQQFPLIDRTFAKF---GVEVVHENGWSHTRQNGPLKVVKP 297

Query: 296 RTTE---------YPGFPTDMQAQFMALNCIAEGTSHVTETIFE-------------XRI 333
            T+          +P  P D+   F+AL   AEG +     I++               +
Sbjct: 298 FTSNILTKVEAAPWPYLPVDLLPIFIALGVKAEGNTMFWNKIYDGAMGWSSELSKFGAHV 357

Query: 334 F---PH--------SLAPVMATD---LRASASLVIAGLAAQGETLIERIYHLDRGYDRME 379
           F   PH         L+P        +R + +L +   + +G + I     + R + +  
Sbjct: 358 FLGDPHRLITFGGLPLSPASVESPYIIRVAIALFMVAASIEGRSEIRNALPIRRAHPKFV 417

Query: 380 NKLSSIGAQIERVK 393
             L S+GA ++ V+
Sbjct: 418 ENLRSLGAVVDWVE 431


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,163,508
Number of extensions: 48051
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 3
Length of query: 393
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 306
Effective length of database: 1,207,925
Effective search space: 369625050
Effective search space used: 369625050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)