BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0040.p
         (403 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313355|ref|YP_003777447.1| histidinol dehydrogenase oxidor...   324   6e-90
gi|300313354|ref|YP_003777446.1| DNA-methyltransferase [Herbaspi...   323   2e-89

>gi|300313355|ref|YP_003777447.1| histidinol dehydrogenase
           oxidoreductase [Herbaspirillum seropedicae SmR1]
          Length = 438

 Score =  324 bits (831), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 157/176 (89%), Positives = 164/176 (93%)

Query: 41  GGAQAVGALAYGTDTIPQVDKIVGPGNAYVAAAKRRVFGTVGIDMIAGPSEILVICDGST 100
           GGAQAVGALAYGT TIPQVDKIVGPGNAYVAAAKRRVFG VGIDMIAGPSEILVICDG+T
Sbjct: 196 GGAQAVGALAYGTATIPQVDKIVGPGNAYVAAAKRRVFGVVGIDMIAGPSEILVICDGAT 255

Query: 101 DPDWIAMDLFSQAEHDELAQSILLCPDADYIARVEASINKQLDAMPRKDVIRTSLTDRGA 160
           DPDWIAMDLFSQAEHDELAQSILLCPDADYIA+VEASIN+ LD MPRKDVIRTSLTDRGA
Sbjct: 256 DPDWIAMDLFSQAEHDELAQSILLCPDADYIAKVEASINRLLDDMPRKDVIRTSLTDRGA 315

Query: 161 LVKVRDMDEACEIANAIAAEHLEISAEQPQQWADKIRHAGAMFLGRFSSRXDRVFC 216
           LVKVRDM EACEIAN IAAEHLEISA++ QQWAD+IRHAGAMFLGRFSS     +C
Sbjct: 316 LVKVRDMAEACEIANMIAAEHLEISAQEAQQWADQIRHAGAMFLGRFSSESLGDYC 371



 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/38 (84%), Positives = 34/38 (89%)

Query: 1  MGIAIRKLDSTDAGFRQKLSSVLAFEAGEDEAIDRAAA 38
          M IAIRKLDS DAGFR +LS+VLAFEA EDEAIDRAAA
Sbjct: 1  MSIAIRKLDSADAGFRDQLSAVLAFEASEDEAIDRAAA 38


>gi|300313354|ref|YP_003777446.1| DNA-methyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 276

 Score =  323 bits (827), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 156/194 (80%), Positives = 165/194 (85%), Gaps = 23/194 (11%)

Query: 212 DRVFCEDALE---GLARIPDGEIDLLIADPPYGLGKDYGNDSDKLDNDAYLAWTEQWIDA 268
           DRVFCEDAL    GLARIPDG +DL+IADPPYGLGKDYGNDSDKLD  AYLAWTEQW+DA
Sbjct: 15  DRVFCEDALSAVGGLARIPDGSVDLMIADPPYGLGKDYGNDSDKLDTAAYLAWTEQWVDA 74

Query: 269 ALPKLKPNGSLYIFLTWRYSPEIFVMLKRRMTMLNEIVWDRRVPSMGGSTRKYSSVHDTI 328
           ALPKLKPNGSLYIFLTWR SPEIFVMLK+RMTM+NEI+WDRRVPSMGGSTR+YSSVHDTI
Sbjct: 75  ALPKLKPNGSLYIFLTWRNSPEIFVMLKQRMTMINEIIWDRRVPSMGGSTRRYSSVHDTI 134

Query: 329 GF--------------------XSKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREHKE 368
           GF                     +KKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREHKE
Sbjct: 135 GFFARAKDYFFDLDAIRIPYDAQTKKARSRSIFVGAKWLEMGYNPKDVWSVSRLHREHKE 194

Query: 369 RADHPTQKPLEIVE 382
           RADHPTQKPLE+VE
Sbjct: 195 RADHPTQKPLEVVE 208


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,238,721
Number of extensions: 49663
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 3
Length of query: 403
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 316
Effective length of database: 1,207,925
Effective search space: 381704300
Effective search space used: 381704300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)