BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0036.p
         (193 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313353|ref|YP_003777445.1| histidinol-phosphate aminotrans...   231   3e-62
gi|300313983|ref|YP_003778075.1| histidinol-phosphate aminotrans...    72   3e-14

>gi|300313353|ref|YP_003777445.1| histidinol-phosphate
           aminotransferase 1 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 372

 Score =  231 bits (589), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 120/175 (68%), Positives = 145/175 (82%)

Query: 17  GIVVVDEAYQPFAQESFMPRLPEFNNLVVMRTVSKLGLAGIRLGYMAAGAALLQEFDKVR 76
           G+VVVDEAYQPFA  + MP LP+ NNLV+MRTVSKLGLAGIRLGY++A  ALL+E DKVR
Sbjct: 197 GLVVVDEAYQPFAASTLMPALPQHNNLVLMRTVSKLGLAGIRLGYLSAAPALLRELDKVR 256

Query: 77  PPYNINVLTQAAAEFVLDHTAELDRQAAALRNARTALAAALVELDGIEVFPSAANFLLIR 136
           PPYN+NVLT+AAA F+L+H   L  QAA LR AR+ALAA L  LDG++VFPSAANFLLIR
Sbjct: 257 PPYNVNVLTEAAALFMLEHLDVLQAQAARLRQARSALAAELAALDGVQVFPSAANFLLIR 316

Query: 137 LANADKVFAGLLQRKVLVKNAGKMHPSLQNCLRVNVSTPEENSLFLIALKESLQE 191
           + +ADKV A LL  +VLVKNAG+MH  LQNCLR+ VS+ +EN++FL ALK +L+E
Sbjct: 317 VPDADKVCASLLAHRVLVKNAGRMHVLLQNCLRITVSSDKENAMFLAALKTALRE 371


>gi|300313983|ref|YP_003778075.1| histidinol-phosphate
           aminotransferase 1 protein [Herbaspirillum seropedicae
           SmR1]
          Length = 360

 Score = 72.0 bits (175), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 9/181 (4%)

Query: 18  IVVVDEAYQPFAQESFMPRLPEFNNLVVMRTVSKL-GLAGIRLGYMAAGAALLQEFDKVR 76
           +VVVDEAY  F  +S +P +  + NL+V++T+SK   LAG+R+G+    A L+   ++V+
Sbjct: 183 VVVVDEAYIDFGGQSAIPLVQRYPNLLVVQTLSKSRALAGMRVGFAVGHADLIDALERVK 242

Query: 77  PPYNINVLTQ---AAAEFVLDHTAELDRQAAALRNARTALAAALVELDGIEVFPSAANFL 133
             +N   L +   A A   ++      +    +  +RTALAA L  L G +V PSAANFL
Sbjct: 243 NSFNSYPLDRPAIAGATAAIEDEDYFRKTCNMVIASRTALAAQLAGL-GFQVLPSAANFL 301

Query: 134 LIRLANADKVFAGLLQRK--VLVKNAGKMHPSLQNCLRVNVSTPEENSLFLIALKESLQE 191
            +R    D        R   ++V++       +   LR+ + T E+  + + AL+  L +
Sbjct: 302 FVRHPQHDAAQLAAALRADGIIVRHFKSER--ISQFLRITIGTDEDCGVLVEALRRHLGQ 359

Query: 192 R 192
           +
Sbjct: 360 Q 360


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 505,974
Number of extensions: 16919
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 193
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 113
Effective length of database: 1,241,070
Effective search space: 140240910
Effective search space used: 140240910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)