BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0033.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313350|ref|YP_003777442.1| phosphoribosylformimino-5-amino...   483   e-137
gi|300313349|ref|YP_003777441.1| imidazole glycerol-phosphate sy...   103   2e-23
gi|300313489|ref|YP_003777581.1| imidazoleglycerol-phosphate syn...    69   5e-13

>gi|300313350|ref|YP_003777442.1|
           phosphoribosylformimino-5-aminoimidazole carboxamide
           ribonucleotide (ProFAR) isomerase [Herbaspirillum
           seropedicae SmR1]
          Length = 265

 Score =  483 bits (1242), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/253 (93%), Positives = 244/253 (96%)

Query: 1   MLLIPAIDLKDGHCVRLKQGDMDQATVFSQDPAEMARHWLLQGARRLHLVDLNGAFAGKP 60
           MLLIPAIDLKDGHCVRLKQGDMDQATVFS+DPAEMA HWL QGARRLHLVDLNGAFAGKP
Sbjct: 1   MLLIPAIDLKDGHCVRLKQGDMDQATVFSEDPAEMALHWLKQGARRLHLVDLNGAFAGKP 60

Query: 61  KNESAVKAILKAVRDFAVENDVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP 120
           KNE+AVKAILKAV  FA EN+VEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP
Sbjct: 61  KNEAAVKAILKAVASFAEENEVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNP 120

Query: 121 GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEVIDLAQKFEGYGCEAIVYTDIGR 180
           GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEV+DLAQKFEGYGCEAIVYTDIGR
Sbjct: 121 GFLHDACSAFPGQIIVGLDAKDGKVATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGR 180

Query: 181 DGMMGGVNIEATVRLAQAVSIPIIASGGVHNIKDVEALCGVQDEGIEAVICGRSIYEGTL 240
           DGMMGGVNIEATVRLAQAV+IPIIASGGVHN+ DVEALC V+DEGIEAVICGRSIYEGTL
Sbjct: 181 DGMMGGVNIEATVRLAQAVTIPIIASGGVHNVGDVEALCRVEDEGIEAVICGRSIYEGTL 240

Query: 241 DLSSAQDRADQLT 253
           DL S QDRAD+LT
Sbjct: 241 DLRSGQDRADELT 253


>gi|300313349|ref|YP_003777441.1| imidazole glycerol-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 119/223 (53%), Gaps = 27/223 (12%)

Query: 3   LIPAIDLKDGHCVR----LKQGDMDQATVFSQDPAEMARHWLLQGARRLHLVDLNGAFAG 58
           +IP +D+  G  V+    L+  D       + DP E+AR +  QGA  L  +D+  +  G
Sbjct: 7   IIPCLDVTAGRVVKGVNFLELRD-------AGDPVEIARRYDEQGADELTFLDITASSDG 59

Query: 59  KPKNESAVKAILKAVRDFAVENDVEEIPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVK 118
           +      ++A+   V           IP+ +GGG+R ++ + R L+ G   + I T+AV 
Sbjct: 60  RDLILDIIEAVASQVF----------IPLTVGGGVRAVEDVRRLLNAGADKVGINTSAVT 109

Query: 119 NPGFLHDACSAFPGQ-IIVGLDAK---DGK--VATDGWSKLSGHEVIDLAQKFEGYGCEA 172
           NP  + DA S +  Q I+V +DAK   DGK  V T G  K +G + ++ A+K    G   
Sbjct: 110 NPQLVADAASKYGSQCIVVAIDAKRAGDGKWEVYTHGGRKATGLDAVEWARKMAQLGAGE 169

Query: 173 IVYTDIGRDGMMGGVNIEATVRLAQAVSIPIIASGGVHNIKDV 215
           I+ T + RDG   G +++ T  +++AVSIP+IASGGV  ++D+
Sbjct: 170 ILLTSMDRDGTKSGFDLDLTRAVSEAVSIPVIASGGVGGLQDL 212


>gi|300313489|ref|YP_003777581.1| imidazoleglycerol-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score = 68.6 bits (166), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 85  IPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNPGFLHDACSAFPGQ-IIVGLDAKDG 143
           +P+  GGGIR LD        G   + + T A++NP  + +  + +  Q ++V +D K G
Sbjct: 75  MPLGYGGGIRSLDDARSVFSIGFEKVAVNTHALENPSLISEIATEYGSQAVVVSVDVKGG 134

Query: 144 -----KVATDGWSKLSGHEVIDLAQKFEGYGCEAIVYTDIGRDGMMGGVNIEATVRLAQA 198
                 V +      +G + +  AQ+ E  G   +  T I R+G   G +I+   ++  A
Sbjct: 135 VLGGQTVRSHSGRHNTGRDPVAWAQEAERLGAGELFLTAIDREGTWSGFDIDLVKKVTDA 194

Query: 199 VSIPIIASGGVHNIKDVEALCGVQDEGIEAVICGRSI 235
           VSIP+IA GG  ++ D+  +  V+  G  AV  G  +
Sbjct: 195 VSIPVIAHGGAGSLSDIRKV--VKQAGASAVALGSMV 229


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 859,396
Number of extensions: 37152
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 3
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)