BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0032.p
         (233 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313349|ref|YP_003777441.1| imidazole glycerol-phosphate sy...   400   e-113
gi|300313489|ref|YP_003777581.1| imidazoleglycerol-phosphate syn...   161   4e-41
gi|300313350|ref|YP_003777442.1| phosphoribosylformimino-5-amino...    81   6e-17

>gi|300313349|ref|YP_003777441.1| imidazole glycerol-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score =  400 bits (1027), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 206/245 (84%), Positives = 214/245 (87%), Gaps = 22/245 (8%)

Query: 1   MTLAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIAL---------------------- 38
           M LAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIA                       
Sbjct: 1   MALAKRIIPCLDVTAGRVVKGVNFLELRDAGDPVEIARRYDEQGADELTFLDITASSDGR 60

Query: 39  GLLLDIIEAVASQVFIPLTVGGGVRAVDDVRRLLNAGADKVGINTSAVTNPQLVEDAAGK 98
            L+LDIIEAVASQVFIPLTVGGGVRAV+DVRRLLNAGADKVGINTSAVTNPQLV DAA K
Sbjct: 61  DLILDIIEAVASQVFIPLTVGGGVRAVEDVRRLLNAGADKVGINTSAVTNPQLVADAASK 120

Query: 99  YGSQCIVVAIDAKRTGEGKWEVFTHGGRNATGLDAVEWARKMAQLGAGEILLTSMDRDGT 158
           YGSQCIVVAIDAKR G+GKWEV+THGGR ATGLDAVEWARKMAQLGAGEILLTSMDRDGT
Sbjct: 121 YGSQCIVVAIDAKRAGDGKWEVYTHGGRKATGLDAVEWARKMAQLGAGEILLTSMDRDGT 180

Query: 159 RSGFDLALTRAVSDAVAIPVIASGGVGGLQDLADGIKQGKADAVLAASIFHYGQHTVQEA 218
           +SGFDL LTRAVS+AV+IPVIASGGVGGLQDLADGI +GKADAVLAASIFHYGQHTVQEA
Sbjct: 181 KSGFDLDLTRAVSEAVSIPVIASGGVGGLQDLADGITKGKADAVLAASIFHYGQHTVQEA 240

Query: 219 KRFMA 223
           KRFMA
Sbjct: 241 KRFMA 245


>gi|300313489|ref|YP_003777581.1| imidazoleglycerol-phosphate
           synthase [Herbaspirillum seropedicae SmR1]
          Length = 253

 Score =  161 bits (408), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/233 (39%), Positives = 133/233 (57%), Gaps = 22/233 (9%)

Query: 3   LAKRIIPCLDVTAGRVVKGVNFLELRDAGDP---------VEIALGLLLDI--------- 44
           L  R+IP L +    +VK   F      GDP         +E+     LDI         
Sbjct: 2   LRTRVIPALLLQHESLVKTQRFSTFDYVGDPCNTVRIFNELEVDELFFLDIAASREKKGP 61

Query: 45  ----IEAVASQVFIPLTVGGGVRAVDDVRRLLNAGADKVGINTSAVTNPQLVEDAAGKYG 100
               +  +A++ F+PL  GGG+R++DD R + + G +KV +NT A+ NP L+ + A +YG
Sbjct: 62  NLQLLADIANECFMPLGYGGGIRSLDDARSVFSIGFEKVAVNTHALENPSLISEIATEYG 121

Query: 101 SQCIVVAIDAKRTGEGKWEVFTHGGRNATGLDAVEWARKMAQLGAGEILLTSMDRDGTRS 160
           SQ +VV++D K    G   V +H GR+ TG D V WA++  +LGAGE+ LT++DR+GT S
Sbjct: 122 SQAVVVSVDVKGGVLGGQTVRSHSGRHNTGRDPVAWAQEAERLGAGELFLTAIDREGTWS 181

Query: 161 GFDLALTRAVSDAVAIPVIASGGVGGLQDLADGIKQGKADAVLAASIFHYGQH 213
           GFD+ L + V+DAV+IPVIA GG G L D+   +KQ  A AV   S+  Y + 
Sbjct: 182 GFDIDLVKKVTDAVSIPVIAHGGAGSLSDIRKVVKQAGASAVALGSMVVYQKQ 234


>gi|300313350|ref|YP_003777442.1|
           phosphoribosylformimino-5-aminoimidazole carboxamide
           ribonucleotide (ProFAR) isomerase [Herbaspirillum
           seropedicae SmR1]
          Length = 265

 Score = 81.3 bits (199), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 6/137 (4%)

Query: 54  IPLTVGGGVRAVDDVRRLLNAGADKVGINTSAVTNPQLVEDAAGKYGSQCIVVAIDAKRT 113
           IP+ +GGG+R +D + R L+ G   + I T+AV NP  + DA   +  Q I+V +DAK  
Sbjct: 85  IPVQLGGGIRDLDTIERYLDDGLSYIIIGTAAVKNPGFLHDACSAFPGQ-IIVGLDAK-- 141

Query: 114 GEGKWEVFTHGGRNATGLDAVEWARKMAQLGAGEILLTSMDRDGTRSGFDLALTRAVSDA 173
            +GK  V T G    +G + V+ A+K    G   I+ T + RDG   G ++  T  ++ A
Sbjct: 142 -DGK--VATDGWSKLSGHEVVDLAQKFEGYGCEAIVYTDIGRDGMMGGVNIEATVRLAQA 198

Query: 174 VAIPVIASGGVGGLQDL 190
           V IP+IASGGV  + D+
Sbjct: 199 VTIPIIASGGVHNVGDV 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 674,826
Number of extensions: 27592
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 3
Length of query: 233
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,231,600
Effective search space: 185971600
Effective search space used: 185971600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)