BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0008.p (139 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 127 4e-31 gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 80 9e-17 gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPa... 79 1e-16 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 77 5e-16 gi|300310683|ref|YP_003774775.1| amino acid ABC transporter comp... 74 6e-15 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 127 bits (318), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 64/105 (60%), Positives = 79/105 (75%) Query: 34 DXTLLSLSIALANRPRLLLMDEPTAGMAPGERNELMALTRELVVARKLAVLFTEHSMDVV 93 D + L++AL+N PRLLLMDEPTAGMA ER LMALTR LV R +AVLFTEHSMDVV Sbjct: 149 DIKRVELAMALSNAPRLLLMDEPTAGMATQERQALMALTRRLVNERGIAVLFTEHSMDVV 208 Query: 94 FAFADRMIVLARGRIIAQGDGETIRNHPQVQEVYLGSGTTFGQEA 138 FA ADR++VLARG+++A G +R +V+E+Y GSG +FG A Sbjct: 209 FAHADRILVLARGQLVADGAPAVVRADARVRELYFGSGASFGGAA 253 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 79.7 bits (195), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 38/93 (40%), Positives = 62/93 (66%), Gaps = 2/93 (2%) Query: 37 LLSLSIALANRPRLLLMDEPTAGMAPGERNELMALTRELVVARKLAVLFTEHSMDVVFAF 96 L+ +++ALA +P++LL+DEP AG+ E EL + +L R++ ++F EH M +VF F Sbjct: 162 LVEIALALATQPKVLLLDEPAAGIPSAESRELFEVIAQL--PREVTIVFIEHDMGLVFRF 219 Query: 97 ADRMIVLARGRIIAQGDGETIRNHPQVQEVYLG 129 A+R+ VL G+++ +G I P+V+EVYLG Sbjct: 220 AERITVLVGGKVLVEGTPAEIAADPRVKEVYLG 252 >gi|300312952|ref|YP_003777044.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 79.3 bits (194), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/96 (43%), Positives = 60/96 (62%), Gaps = 2/96 (2%) Query: 38 LSLSIALANRPRLLLMDEPTAGMAPGERNELMALTRELVVARKLAVLFTEHSMDVVFAFA 97 L + +A+A PR+LLMDEP AGM E +++AL + L +L V+ EH M+ VFA A Sbjct: 161 LDVGLAIACSPRVLLMDEPMAGMGHEESGDMIALIQSL--KEELTVVLVEHDMEAVFALA 218 Query: 98 DRMIVLARGRIIAQGDGETIRNHPQVQEVYLGSGTT 133 DRM VL +G ++A G + IR + +V+ YLG T Sbjct: 219 DRMTVLVQGAVLATGSVDEIRANAEVKLAYLGEEET 254 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 77.0 bits (188), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 38 LSLSIALANRPRLLLMDEPTAGMAPGERNELMALTRELVVARKLAVLFTEHSMDVVFAFA 97 L + ALA +P+LLL+DEP AGM P E+ ELM+ + R + EH M V Sbjct: 159 LEFARALATKPKLLLLDEPVAGMNPAEKTELMSEIVN-IKQRGFTIFMIEHDMRFVMGLC 217 Query: 98 DRMIVLARGRIIAQGDGETIRNHPQVQEVYLGS 130 +R+ VL G+IIA+G + I+N+ +V E YLG Sbjct: 218 ERIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGK 250 >gi|300310683|ref|YP_003774775.1| amino acid ABC transporter composite ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 627 Score = 73.6 bits (179), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 41/93 (44%), Positives = 57/93 (61%), Gaps = 1/93 (1%) Query: 37 LLSLSIALANRPRLLLMDEPTAGMAPGERNELMALTRELVVARKLAVLFTEHSMDVVFAF 96 +L ++ ALA P LLL+DEP AG+ GE+ L L R+L +A+L EH MD V Sbjct: 509 ILEIARALAADPCLLLLDEPAAGLRLGEKQALAELLRKLR-GEGMAILLVEHDMDFVMEL 567 Query: 97 ADRMIVLARGRIIAQGDGETIRNHPQVQEVYLG 129 DR++V+ G+ IA+G I+N+P V E YLG Sbjct: 568 VDRIVVMDFGQKIAEGLPADIQNNPAVLEAYLG 600 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 415,420 Number of extensions: 15082 Number of successful extensions: 247 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 251 Number of HSP's successfully gapped: 35 Length of query: 139 Length of database: 1,619,870 Length adjustment: 76 Effective length of query: 63 Effective length of database: 1,260,010 Effective search space: 79380630 Effective search space used: 79380630 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)