BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0002.p
         (105 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis tra...    74   2e-15
gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen...    73   5e-15
gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra...    72   1e-14
gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra...    71   1e-14
gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen...    71   2e-14

>gi|300312448|ref|YP_003776540.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 596

 Score = 74.3 bits (181), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 45/52 (86%)

Query: 21  LVDEAGATMGEILDSIQRVTSIMGDISSASDEQTRGIEQINNAITQMDQVTQ 72
           LV++AGATM E++ S+QRVT I+G+I+ AS EQ+ GIEQ+N AITQMD+VTQ
Sbjct: 432 LVEQAGATMSEVVTSVQRVTDIVGEIAEASREQSTGIEQVNRAITQMDEVTQ 483


>gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis
           sensory transducer protein [Herbaspirillum seropedicae
           SmR1]
          Length = 567

 Score = 72.8 bits (177), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 44/52 (84%)

Query: 21  LVDEAGATMGEILDSIQRVTSIMGDISSASDEQTRGIEQINNAITQMDQVTQ 72
           LV +AG T+ E++ S+QRVT +M +IS+AS EQT+GIEQ+N AITQMD+VTQ
Sbjct: 432 LVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDEVTQ 483


>gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 597

 Score = 71.6 bits (174), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/52 (63%), Positives = 46/52 (88%)

Query: 21  LVDEAGATMGEILDSIQRVTSIMGDISSASDEQTRGIEQINNAITQMDQVTQ 72
           LV++AG TM E++ S++RVT ++ +IS+AS+EQ+ GIEQIN+AITQMDQVTQ
Sbjct: 430 LVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQ 481


>gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 536

 Score = 71.2 bits (173), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 44/52 (84%)

Query: 21  LVDEAGATMGEILDSIQRVTSIMGDISSASDEQTRGIEQINNAITQMDQVTQ 72
           LV++AG TM E++ S++RVT I+ +IS+AS EQT GIEQIN AITQMDQVTQ
Sbjct: 431 LVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQ 482


>gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis
           sensory transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 585

 Score = 71.2 bits (173), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 49/62 (79%)

Query: 11  AIAAMRSAFFLVDEAGATMGEILDSIQRVTSIMGDISSASDEQTRGIEQINNAITQMDQV 70
           ++A + S   LV+EAG TM EI++S+QRVT+++ +IS+A +EQ  GIEQ++ A+ QMDQV
Sbjct: 423 SVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMDQV 482

Query: 71  TQ 72
           TQ
Sbjct: 483 TQ 484


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 219,490
Number of extensions: 5856
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 53
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 53
Length of query: 105
Length of database: 1,619,870
Length adjustment: 72
Effective length of query: 33
Effective length of database: 1,278,950
Effective search space: 42205350
Effective search space used: 42205350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)