BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0010.p
         (296 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311085|ref|YP_003775177.1| NADH dehydrogenase [Herbaspiril...   248   3e-67

>gi|300311085|ref|YP_003775177.1| NADH dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 430

 Score =  248 bits (634), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 122/158 (77%), Positives = 136/158 (86%)

Query: 137 QIARHTLRGEFRRIDPHQANVVLLEGSDRVLAAFPPDLSEKARMQLVKLGVDVRTGSRVT 196
           +IARHTL GEFR IDPH A VVL+EGSDR+L A+PPDLS+KAR QL KLGVDVRTGSRV 
Sbjct: 175 EIARHTLAGEFRNIDPHSARVVLIEGSDRILGAYPPDLSDKAREQLQKLGVDVRTGSRVV 234

Query: 197 GIDQECVRYTDRDGDQRLASRTVIWSAGVAASPLGKALNVPLDRAGRVPVGGELSIPGHP 256
            ID+ CVRYT+ DG+Q L++RTVIWSAGVAASPLG+AL V LDRAGRVPV  EL+I GH 
Sbjct: 235 HIDETCVRYTNFDGEQTLSTRTVIWSAGVAASPLGRALGVELDRAGRVPVSPELNIAGHD 294

Query: 257 EVFVIGDLAAVTSEGKPVPGVSPAAKQMGRVAARNGGH 294
           +V+VIGDLAA  SEGKPVPGVSPAAKQMGRVAARN  H
Sbjct: 295 DVYVIGDLAAAQSEGKPVPGVSPAAKQMGRVAARNIKH 332



 Score = 87.4 bits (215), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 62/93 (66%), Gaps = 4/93 (4%)

Query: 39  CGRNVSNHSGNAVASRTLLINSASVSXA--SRTLLINSASWAGRVPVGGELSIPGHPEVF 96
           C R  +N  G    S   +I SA V+ +   R L +     AGRVPV  EL+I GH +V+
Sbjct: 240 CVR-YTNFDGEQTLSTRTVIWSAGVAASPLGRALGVELDR-AGRVPVSPELNIAGHDDVY 297

Query: 97  VIGDLAAVTSEGKPVPGVSPAAKQMGRVAARNI 129
           VIGDLAA  SEGKPVPGVSPAAKQMGRVAARNI
Sbjct: 298 VIGDLAAAQSEGKPVPGVSPAAKQMGRVAARNI 330


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,015,010
Number of extensions: 45602
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,217,395
Effective search space: 256870345
Effective search space used: 256870345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)