BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0008.p
         (328 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311087|ref|YP_003775179.1| transmembrane protein [Herbaspi...   523   e-150

>gi|300311087|ref|YP_003775179.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 328

 Score =  523 bits (1348), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 250/328 (76%), Positives = 292/328 (89%)

Query: 1   MNTLITINEIYYLIGVIVMLLVGMTLRDKGNPKRLTTALFWFLFGSVFLFSDLLVSSLGK 60
           MNTLI+IN IYYLIG+IVM+L  MTLRDKGNPKR TTALFWFLFG+VFLF DLLV +LGK
Sbjct: 1   MNTLISINRIYYLIGIIVMMLTVMTLRDKGNPKRFTTALFWFLFGAVFLFGDLLVENLGK 60

Query: 61  PLAYRIIGVVVILLSLIAGFGLLSIGTYKQRSAEQRQASANQYGNWIFVPAILIPVVTVL 120
            +A+RIIG  VI++SLIAG GLLS+G+Y   + E+R AS+ + GNW+F PA+LIPV+TV 
Sbjct: 61  SMAHRIIGGTVIIISLIAGTGLLSMGSYATSTHEERVASSKRLGNWLFFPAVLIPVITVA 120

Query: 121 CTLLLKGVAIGGVYLLDQKQLTLAALCVGCICAILAGWKLTGGTPLHAVRESRRLLDAIG 180
           CT+LLKGV++GGV LLDQKQLTLAALCV C+CA++AG  LT GTPL AVR+SRRL+D+IG
Sbjct: 121 CTVLLKGVSVGGVMLLDQKQLTLAALCVACVCALIAGCVLTRGTPLQAVRQSRRLVDSIG 180

Query: 181 WAAVLPQMLAMLGGVFVAAQTGKSVQQVVGLFVNPENRFMLIVIYCVGMALFTMIMGNAF 240
           WAA+LP MLAMLGGVFVAA+TG SVQQVV LFVNP+NRF+++VIYCVGMALFTM+MGNAF
Sbjct: 181 WAAILPLMLAMLGGVFVAAKTGTSVQQVVSLFVNPDNRFLVVVIYCVGMALFTMVMGNAF 240

Query: 241 AAFPVMTAGIALPFIIVGQHADPAPLVTIGMLAGYCGTLMTPMAANYNIVPAALLELKDK 300
           AAFPVM+AGIALPF+I+G HADPAPLV IGM +GYCGTLMTPMAANYNIVPAALLELK+K
Sbjct: 241 AAFPVMSAGIALPFLILGHHADPAPLVAIGMYSGYCGTLMTPMAANYNIVPAALLELKNK 300

Query: 301 YQVIKVQIPTGITLLAANILLMYFIVFR 328
           YQVIKVQIPT +TLL  N+ LMYF+ FR
Sbjct: 301 YQVIKVQIPTALTLLTVNVFLMYFLAFR 328


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.144    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 908,185
Number of extensions: 36226
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 242
Effective length of database: 1,212,660
Effective search space: 293463720
Effective search space used: 293463720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)