BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0007.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311088|ref|YP_003775180.1| transmembrane protein [Herbaspi...   377   e-106

>gi|300311088|ref|YP_003775180.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  377 bits (969), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/234 (82%), Positives = 215/234 (91%), Gaps = 1/234 (0%)

Query: 1   MDSSILLPLIGIPIVVAGFAFRFNPLLVVTVAGLATGLAVGMDFGMLLETFGEKFINSRS 60
           M+S+ LLPLIGIPIVVAGFA RFNPLLVVTVAGL TGL+VGMDFGMLLETFGEKF+NSRS
Sbjct: 1   MESTTLLPLIGIPIVVAGFALRFNPLLVVTVAGLTTGLSVGMDFGMLLETFGEKFVNSRS 60

Query: 61  LAVYVLILPIIGLLESYGLKERAQDWISSMASATSARILMLYFILRQVFGALGLTYIGGQ 120
           LA ++LILPIIGLLE YGLKERAQ WISS+ASATSARILMLYFILR+   ALGL Y+GGQ
Sbjct: 61  LATFLLILPIIGLLEHYGLKERAQAWISSIASATSARILMLYFILREGTAALGLIYLGGQ 120

Query: 121 AQTVRPLLAPMVEGAATARYG-DLPQHIRDKLRAHSAACDNIAVFFGEDIFLAFGAVLLI 179
           AQTVRPLLAPM EGAA   YG DLPQHIRDK++AH+AACDNIAVFFGEDIF+AFGAVLL+
Sbjct: 121 AQTVRPLLAPMAEGAAVNAYGEDLPQHIRDKIKAHAAACDNIAVFFGEDIFIAFGAVLLM 180

Query: 180 DAFLKENGITNVEPLHLGLWAIPTAIAALAIHMFRLVRLDAGIQRDVNAWQKSE 233
           DAFLKENGITN+EPLH+GLWAIPTA++AL IHMFRL RLDA I+RDV+AW+ ++
Sbjct: 181 DAFLKENGITNIEPLHIGLWAIPTALSALVIHMFRLTRLDASIRRDVDAWKATQ 234


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.142    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 718,889
Number of extensions: 29613
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 129 (54.3 bits)