BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0004.p
         (219 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1...   323   8e-90
gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1...    57   1e-09

>gi|300311091|ref|YP_003775183.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  323 bits (827), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 153/216 (70%), Positives = 179/216 (82%)

Query: 4   IQPQLHFLGDGALLCNLPPPATLAHQQRIWSIADAATQWPEVAEVVPGMNNLTLILRRPV 63
           +QPQLH LGD ALLC+LP PATL  QQRIW++A+ A QW EV+EVVPGMNNLTLI  RPV
Sbjct: 1   MQPQLHPLGDRALLCSLPAPATLPQQQRIWALAELAGQWEEVSEVVPGMNNLTLITTRPV 60

Query: 64  ADMDAVSKRILSSWKHVDAGQLSGRDVDIPVVYGGADGPDLDVIARHTGLSTAEVIRRHS 123
            D++ ++ RI ++W  +   +  GR V+IPVVYGG+ GPDLD +ARHTGLST EVI RHS
Sbjct: 61  VDLEILAHRIETTWPKLSGERSVGRTVEIPVVYGGSAGPDLDNVARHTGLSTEEVIARHS 120

Query: 124 EGEYVVYFIGFMPGFAYMGGLDPQLATPRQNEPRLTIPAGSVGIGGEQTGIYPLASPGGW 183
             EYVVYF+GF+PGFAYMGGLD  LATPR   PR++IPAGSVGIGGEQTG+YP+ASPGGW
Sbjct: 121 NAEYVVYFLGFLPGFAYMGGLDASLATPRHTTPRVSIPAGSVGIGGEQTGVYPMASPGGW 180

Query: 184 QLLGRTALSLFDPTQNPPTLLRPGDRVRFTVERIAK 219
           QL+GRT L LFDP+Q PPTLLRPGDRVRFTVER+A 
Sbjct: 181 QLIGRTTLQLFDPSQEPPTLLRPGDRVRFTVERVAS 216


>gi|300313400|ref|YP_003777492.1| allophanate hydrolase subunit 1
           [Herbaspirillum seropedicae SmR1]
          Length = 299

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 11/127 (8%)

Query: 103 DLDVIARHTGL-STAEVIRRHSEGEYVVYFIGFMPGFAYMGGL---DPQLATPRQNEPRL 158
           DL   AR  G   T   I  HS   + V  +GF+ G  +M  +   D QL  P+   PR 
Sbjct: 128 DLQYAARINGYDETQAFIAAHSGTPWFVSMVGFVAGLPFMYQMVEQDRQLQVPKYLRPRT 187

Query: 159 TIPAGSVGIGGEQTGIYPLASPGGWQLLGRTALSLFDPTQNPPTL------LRPGDRVRF 212
             P  ++G GG    IY +   GG+Q+ G T   ++DP Q  P L       R GD V+F
Sbjct: 188 DTPKLTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQGLPYLRESMVFFRAGDIVQF 247

Query: 213 T-VERIA 218
             ++R A
Sbjct: 248 KPIDRTA 254


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.139    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 855,238
Number of extensions: 40862
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 219
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,231,600
Effective search space: 168729200
Effective search space used: 168729200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)