BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0003.p
         (182 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311092|ref|YP_003775184.1| hypothetical protein Hsero_1763...   259   1e-70

>gi|300311092|ref|YP_003775184.1| hypothetical protein Hsero_1763
           [Herbaspirillum seropedicae SmR1]
          Length = 170

 Score =  259 bits (661), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 122/136 (89%), Positives = 129/136 (94%)

Query: 1   MAGNAFNRWMMRCMMAAGAKDMTAIEVSLLHHVNHRERKKKLADICFVLNIEDTHVVTYA 60
           MA NAFNRWM+RCM AAGAKDMTAIEVSLLHHVNHR+RKKKLADICFVLN+EDTHVVTYA
Sbjct: 31  MASNAFNRWMVRCMAAAGAKDMTAIEVSLLHHVNHRDRKKKLADICFVLNVEDTHVVTYA 90

Query: 61  LKKLVKAGYVKSEKAGKELLFSTTDEGQQLCMRYKEVRERCLIEVQVDSGIQNQAIGEAA 120
           LKKLVKAGYVKSEKAGKELLFSTT  GQ LCM+Y+EVRERCLIEVQ +SGI NQAIGEAA
Sbjct: 91  LKKLVKAGYVKSEKAGKELLFSTTPAGQALCMKYREVRERCLIEVQAESGIPNQAIGEAA 150

Query: 121 QLLRSASGLYDTAARA 136
           QLLR+ASGLYDTAARA
Sbjct: 151 QLLRNASGLYDTAARA 166


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.126    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 447,935
Number of extensions: 13232
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 102
Effective length of database: 1,241,070
Effective search space: 126589140
Effective search space used: 126589140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)