BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0024.0002.p
         (237 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [H...   255   2e-69
gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase [H...    69   3e-13

>gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score =  255 bits (652), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 130/170 (76%), Positives = 141/170 (82%)

Query: 18  PRPVEFKAFIAHQKKKNFFTVWSNVFERARLAPGETLLVQGGSSGIGVTAIQIAAALGHR 77
           P P    A  A    +N+FTVWSNVF+R +L+  ETLLVQGGSSGIGVTAIQIA ALGHR
Sbjct: 107 PVPKGLSALEAAALPENYFTVWSNVFDRGQLSGEETLLVQGGSSGIGVTAIQIARALGHR 166

Query: 78  VFATAGSDDKCRACEALGAELAINYRTGDFEEAVKAVTEGRGVDVILDMVGGDYLPREIK 137
           VFATAGS +KCRACE LGAE AINY+T DFE  VK +T GRGVDVILDMVGGDYLPREIK
Sbjct: 167 VFATAGSAEKCRACEELGAERAINYKTEDFEAVVKELTGGRGVDVILDMVGGDYLPREIK 226

Query: 138 TLADDGRLVIIALLGGAKGQLDMSQILRRRLTVTGSTLRPRPVEFKAFIA 187
            LADDGRLV IA LGGAKGQLDM Q++RRRLT+TGSTLRPRPV FKA IA
Sbjct: 227 ALADDGRLVFIAQLGGAKGQLDMGQVMRRRLTITGSTLRPRPVAFKAAIA 276


>gi|300312848|ref|YP_003776940.1| NADPH:quinone oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score = 69.3 bits (168), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 62/130 (47%), Gaps = 5/130 (3%)

Query: 50  PGETLLVQGGSSGIGVTAIQIAAALGHRVFATAGSDDKCRACEALGAELAINYRTGDFEE 109
           PG+T+L    + GIG+ A Q A ALG  +  T  SD+K       GA   INY+T +F E
Sbjct: 139 PGDTILFHAAAGGIGLIACQWARALGVNLIGTVSSDEKAALALQHGAAHVINYKTENFVE 198

Query: 110 AVKAVTEGRGVDVILDMVGGDYLPREIKTLADDGRLVIIALLGGAKGQLDMSQILRRRLT 169
            VK +T GRGV V+ D +G D     +  L   G +V      G      +S++  R   
Sbjct: 199 RVKELTGGRGVQVVYDSIGKDTFLGSLDCLRPRGMMVSFGNASGPVAPFGVSELASR--- 255

Query: 170 VTGSTLRPRP 179
             GS    RP
Sbjct: 256 --GSLFLTRP 263


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 804,251
Number of extensions: 35843
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 3
Length of query: 237
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 155
Effective length of database: 1,231,600
Effective search space: 190898000
Effective search space used: 190898000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)