BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0041.p (182 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311514|ref|YP_003775606.1| two component sensor histidine ... 214 2e-57 gi|300313829|ref|YP_003777921.1| sensor histidine kinase [Herbas... 81 5e-17 gi|300313666|ref|YP_003777758.1| two component sensor histidine ... 79 2e-16 gi|300310848|ref|YP_003774940.1| two component sensor histidine ... 78 4e-16 gi|300313895|ref|YP_003777987.1| two-component system sensor his... 77 1e-15 >gi|300311514|ref|YP_003775606.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 473 Score = 214 bits (546), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 108/179 (60%), Positives = 139/179 (77%) Query: 1 MDKLVGELLTLSRLEAGVTGAMEDHIRMEDLLTEIIDDARFEAEAVNRHIEGMVRCDVVI 60 MDKLVGELLTLSRLEA V G+ME+ I +E +L ++I+DA FEAEA+ +H++ + C V + Sbjct: 288 MDKLVGELLTLSRLEANVPGSMEEPIAIEAMLGDMINDASFEAEAIGKHVDDQLDCRVQV 347 Query: 61 TGGAELLHRAIENVVRNAVKQTAVDTTVAINTQVDKDRQSLLVSVVDHGPGVPEEELQLI 120 G ELL+RAIENV+RNA+K TA TTV I+TQ+D+ + L +S++D GPGVPEEE+ I Sbjct: 348 KGNPELLYRAIENVLRNAIKHTAPGTTVQIHTQLDEINKLLHLSILDRGPGVPEEEMNSI 407 Query: 121 FEPFFRSSRTRKNSNGYGLGLTIARRIVEAHGGRICAFNRVDGGLCVEIILPYDAIESG 179 FE FFRSSRT+ NS+G+GLGL+IARRIVEAH G I A NR +GGL V+I LP+ A E Sbjct: 408 FELFFRSSRTKSNSSGHGLGLSIARRIVEAHQGFIQAANRSNGGLRVDITLPFMADEPA 466 >gi|300313829|ref|YP_003777921.1| sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 478 Score = 81.3 bits (199), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 7/148 (4%) Query: 26 IRMEDLLTEIIDDARFEAEAVNRHIEGMVRCDVVITGGAELLHRAIENVVRNAVKQTAVD 85 +R++ L+ +I DAR + + + L RAI N+ NA+ Sbjct: 335 VRLDALVLRMIRDARLAGHEI-----AFTPSGINVIAKPLALKRAIGNLFDNAL-YYGQK 388 Query: 86 TTVAINTQVDKDRQSLLVSVVDHGPGVPEEELQLIFEPFFRSSRTR-KNSNGYGLGLTIA 144 ++I + + + + DHGPGVPE+ + +F+P+ R R +NS G GLGL I+ Sbjct: 389 VEISIRPSPGAEGDLVEIEIRDHGPGVPEDAMGTLFQPYVRLEHGRAQNSGGMGLGLGIS 448 Query: 145 RRIVEAHGGRICAFNRVDGGLCVEIILP 172 R IV+AHGG + N +GGL IILP Sbjct: 449 RNIVQAHGGELLLRNHPEGGLMATIILP 476 >gi|300313666|ref|YP_003777758.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 479 Score = 79.0 bits (193), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/116 (39%), Positives = 67/116 (57%), Gaps = 10/116 (8%) Query: 60 ITGGAELLHRAIENVVRNAVK--QTAVDTTVAINTQVDKDRQSLLVSVVDHGPGVPEEEL 117 + G L R ++N+V NAV+ Q A Q+ D + + V D GPG+PE L Sbjct: 370 LQGYPRSLRRCLQNLVENAVRYGQRA-------RVQLQDDADQVCIRVDDDGPGIPEALL 422 Query: 118 QLIFEPFFRSSRTRK-NSNGYGLGLTIARRIVEAHGGRICAFNRVDGGLCVEIILP 172 + + EPF+R R+R + G+GLGL+IA +V+AH G + NR GGL VEI++P Sbjct: 423 ERVQEPFYRLERSRNAGTGGFGLGLSIAATVVQAHRGVMKLVNRPGGGLRVEILIP 478 >gi|300310848|ref|YP_003774940.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 465 Score = 78.2 bits (191), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 84/148 (56%), Gaps = 14/148 (9%) Query: 28 MEDLLTEIIDDARFEAEAVNRHIEGMVRCDVVITGGAELLHRAIENVVRNAVKQ-TAVDT 86 ++ LL + DA + V ++G R V+ GA L R + N++ NA K + Sbjct: 321 IDSLLDSVCADAADAGQDVA--LQGSTRAFVMAQPGA--LRRCLTNLIDNACKYGKSARV 376 Query: 87 TVAINTQVDKDRQSLLVSVVDHGPGVPEEELQLIFEPFFR--SSRTRKNSNGYGLGLTIA 144 ++A+ ++Q + + + D GPG+PE EL+ +FEPF+R +SR+R ++ G GLGLTIA Sbjct: 377 SIAL------EQQKIAIRIRDQGPGIPESELEAVFEPFYRLEASRSR-DTGGTGLGLTIA 429 Query: 145 RRIVEAHGGRICAFNRVDGGLCVEIILP 172 I E H G++ N +GGL V + LP Sbjct: 430 LNIAENHHGQLRLRNLAEGGLEVLLELP 457 >gi|300313895|ref|YP_003777987.1| two-component system sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 475 Score = 76.6 bits (187), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 86/175 (49%), Gaps = 7/175 (4%) Query: 1 MDKLVGELLTLSRLEAGVTGAMEDHIRMEDLL--TEIIDDARFEAEAVNRHIEGMVRCDV 58 ++KLVG+L LS +AG I + LL + + RF + E + + Sbjct: 295 LNKLVGDLYDLSLADAGALTYRRADIDLAPLLRDSAALYSDRFSQRGMRLSCE--LPASM 352 Query: 59 VITGGAELLHRAIENVVRNAVKQTAVDTTVAINTQVDKDRQSLLVSVVDHGPGVPEEELQ 118 + G A L + + N+ N+++ T + ++ + + L+ D PGVP E + Sbjct: 353 PVHGDAARLQQLLSNLFENSLRYTDAGGRLQVHAHLQQQHWHLVFD--DSEPGVPPEVMA 410 Query: 119 LIFEPFFRSSRTR-KNSNGYGLGLTIARRIVEAHGGRICAFNRVDGGLCVEIILP 172 +FE FFR +R + S G GLGL I RRIV+AH G I A GGL V ++LP Sbjct: 411 RLFERFFRVEASRNRASGGAGLGLAICRRIVDAHQGTIGASASPLGGLRVVVVLP 465 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.138 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 548,146 Number of extensions: 20550 Number of successful extensions: 174 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 163 Number of HSP's successfully gapped: 29 Length of query: 182 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 102 Effective length of database: 1,241,070 Effective search space: 126589140 Effective search space used: 126589140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)