BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0040.p
         (298 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311512|ref|YP_003775604.1| membrane protease stomatin/proh...   506   e-145

>gi|300311512|ref|YP_003775604.1| membrane protease
           stomatin/prohibitin protein [Herbaspirillum seropedicae
           SmR1]
          Length = 303

 Score =  506 bits (1304), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/302 (89%), Positives = 285/302 (94%), Gaps = 6/302 (1%)

Query: 1   MFGSVTLVIFFIAIIFVIKTVKVVPQQHAWVVERLGKYHATLGPGLNIVVPFIDRVAYKH 60
           M GSVTLVIFF+AI+FV++TVKVVPQQHAWVVERLGKYHATL PGLNIVVPFIDRVAYKH
Sbjct: 1   MLGSVTLVIFFLAIVFVVQTVKVVPQQHAWVVERLGKYHATLAPGLNIVVPFIDRVAYKH 60

Query: 61  VLKEIPLDVPPQVCITRDNTQLQVDGILYFQ------XSYGSSNYIAAITQLAQTTLRSV 114
           +LKEIPLDVPPQVCIT+DNTQLQVDGILYFQ       SYGSSNYIAAITQLAQTTLRSV
Sbjct: 61  ILKEIPLDVPPQVCITKDNTQLQVDGILYFQITDPMRASYGSSNYIAAITQLAQTTLRSV 120

Query: 115 IGKMELDKTFEERDHINTAIVSAIDESAANWGVKVLRYEIKDLTPPKEILHAMQAQITAE 174
           IGKMELDKTFEERDHINTAIVSAIDESA NWGVKVLRYEIKDLTPPKEILHAMQAQITAE
Sbjct: 121 IGKMELDKTFEERDHINTAIVSAIDESAENWGVKVLRYEIKDLTPPKEILHAMQAQITAE 180

Query: 175 REKRALIAASEGRKQEQINIASGEREASIAKSEGEKQASINRAEGQAAAIIAIANASAEA 234
           REKRALIAASEGRKQEQINIA+GEREA+IA+SEGEKQASIN AEGQAAAI+AIA ASAEA
Sbjct: 181 REKRALIAASEGRKQEQINIATGEREAAIARSEGEKQASINGAEGQAAAILAIAEASAEA 240

Query: 235 LRKTAAAIQSPGGEEAVNLKVAEQYVAAFSQLAKTNNSIIVPANLSDMSTLIASALQVVK 294
           +RKTAAAIQ PGGE+AVNLKVAEQYV AF +LAKTNNSIIVPANLSDMS LIASALQV+K
Sbjct: 241 IRKTAAAIQQPGGEDAVNLKVAEQYVDAFGKLAKTNNSIIVPANLSDMSGLIASALQVIK 300

Query: 295 AQ 296
            Q
Sbjct: 301 QQ 302


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.130    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 710,964
Number of extensions: 24250
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,217,395
Effective search space: 259305135
Effective search space used: 259305135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)