BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0036.p
         (305 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311509|ref|YP_003775601.1| ATP-binding protein [Herbaspiri...   516   e-148

>gi|300311509|ref|YP_003775601.1| ATP-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  516 bits (1329), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 248/279 (88%), Positives = 264/279 (94%)

Query: 27  PSSCPVPLPPANRTVFFVSDGTGITAETLGHSVLSQFELRFKQVRLPFVDTLDKAYDATR 86
           P   P P+  ANRTVFFVSDGTGITAET GHSVLSQFELRFKQVRLPF+DTLDKA+DATR
Sbjct: 2   PIPHPSPVLAANRTVFFVSDGTGITAETFGHSVLSQFELRFKQVRLPFIDTLDKAHDATR 61

Query: 87  RINEVAEVDGKAPIVFSTLVKADLSAVIRQSRAMHMDLFQTFVEPLEQELGVKSTHTIGR 146
           +INE  +VDGK PIVFSTLVK++LS+VIRQ++AMHMDLFQTFVEPLEQEL +KSTHTIGR
Sbjct: 62  KINEAYQVDGKLPIVFSTLVKSELSSVIRQAKAMHMDLFQTFVEPLEQELEMKSTHTIGR 121

Query: 147 SHNTADSEEYKNRIEAINFSLAHDDGQSNKNLASADVILVGVSRSGKTPTSLYLAMQYGI 206
           SHNTADSEEY+NRIEAINFSLAHDDGQSNKNL+ ADVILVGVSRSGKTPTSLYLAMQ+GI
Sbjct: 122 SHNTADSEEYRNRIEAINFSLAHDDGQSNKNLSEADVILVGVSRSGKTPTSLYLAMQFGI 181

Query: 207 KAANYPLIPEDFERDKLPSGLVNFKKKIFGLTIAAERLSEVRNERRPGSKYAAIENCRYE 266
           KAANYPLIPEDFERDKLPSGLV  KKKIFGLTIAAERLSEVRNERRPGSKYA++ENCRYE
Sbjct: 182 KAANYPLIPEDFERDKLPSGLVMHKKKIFGLTIAAERLSEVRNERRPGSKYASLENCRYE 241

Query: 267 INEAEKMMRREGIRWMSSTAKSIEEIAATILQEIKPETR 305
           INEAEKMMRREGIRWMSSTAKSIEEIAATILQEIKPE R
Sbjct: 242 INEAEKMMRREGIRWMSSTAKSIEEIAATILQEIKPEPR 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 840,648
Number of extensions: 32151
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,217,395
Effective search space: 267826900
Effective search space used: 267826900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)