BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0030.p
         (387 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311506|ref|YP_003775598.1| lipid-A-disaccharide synthase [...   575   e-165

>gi|300311506|ref|YP_003775598.1| lipid-A-disaccharide synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score =  575 bits (1482), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 280/379 (73%), Positives = 320/379 (84%)

Query: 2   SIAMVAGESSGDLLASRLLSGLRPRLPDARLHGIGGPHMAEHGFVSDWPMDKLTVRGLFE 61
           SIA+VAGESSGDLL SRLL+G+R RLP+ RLHGIGG HM   GF SDWPMDKLTVRGLFE
Sbjct: 12  SIALVAGESSGDLLGSRLLAGVRERLPEVRLHGIGGEHMMAQGFASDWPMDKLTVRGLFE 71

Query: 62  VVPRYRELKGIQNTLRDQLLAERPSVFIGIDYPGFNLGLEQQLRDAGIPTMHFIGPQIWA 121
           V+PRYRE+KGIQ+ LRD+LLA+RP VF+G+DYPGFNLGLE+QL+ AGIPT+HFIGPQIWA
Sbjct: 72  VIPRYREIKGIQDALRDKLLADRPDVFVGVDYPGFNLGLEEQLKKAGIPTIHFIGPQIWA 131

Query: 122 WRGGRIKKIARAVSHMLVIFPFEEEIYRKAGIPVTYVGHPLAEIIPMEPDQAGARAALGL 181
           WRG RIKKI RAVSHMLVIFPFEE IYR+AG+PVTYVGHPLAE+IP++PD  GAR  L L
Sbjct: 132 WRGWRIKKIQRAVSHMLVIFPFEESIYRQAGVPVTYVGHPLAEVIPLQPDTRGARQRLDL 191

Query: 182 QQDRRVVAILPGSRMSELKYNTASFLGAARLLRRREPQLQFVAPMAGDKQRAYFEQLIVE 241
               RVVAILPGSRMSELK N A FL AARLL++R+ QLQFV P+ GD+Q A F++ I +
Sbjct: 192 NGPGRVVAILPGSRMSELKQNGAGFLAAARLLKQRDAQLQFVTPIGGDRQIAAFQEQIRQ 251

Query: 242 TGSADLGIHVISGQSHAAMEAADAVLVASGTASLEVALYKKPMVIAYKMMRASYAIMRHM 301
            G  DL I VI GQSH+AMEAADAVLVASGTASLEVALYKKPMVI+YK+  ASY IMRHM
Sbjct: 252 GGYEDLDISVIRGQSHSAMEAADAVLVASGTASLEVALYKKPMVISYKVNWASYQIMRHM 311

Query: 302 NYQPWVGLPNILAREFVVPELLQDAATPQALADALWKQLDDPAHCRNLRQRFTDMHHSLL 361
            YQPWVGLPNILAREF+VPELLQ  ATP+ALADA+W QL+D AH + L +RF DMH SLL
Sbjct: 312 AYQPWVGLPNILAREFLVPELLQHQATPEALADAMWFQLEDHAHQQRLARRFADMHQSLL 371

Query: 362 RDTANASAQAVCALLDRQR 380
           RDT+  SA AVC ++  +R
Sbjct: 372 RDTSRESANAVCEVIGARR 390


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,127,776
Number of extensions: 45687
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 300
Effective length of database: 1,207,925
Effective search space: 362377500
Effective search space used: 362377500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 131 (55.1 bits)