BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0025.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA8...   642   0.0  

>gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA87
           antigen protein [Herbaspirillum seropedicae SmR1]
          Length = 791

 Score =  642 bits (1657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/364 (82%), Positives = 336/364 (92%), Gaps = 1/364 (0%)

Query: 1   MKVEEKPTGNIMIGAGFSQTDKLSLTGSISQENAFGSGNTVGIEVNTSSRYRTIAVSQTN 60
           MKVEEKPTGNIM+GAGFSQ+DKLSLTGSISQENAFGSGNTVGI++NTSSRYRT++VS TN
Sbjct: 428 MKVEEKPTGNIMVGAGFSQSDKLSLTGSISQENAFGSGNTVGIDINTSSRYRTVSVSTTN 487

Query: 61  PYFTDDGVSRTYEVFLRTIRPSAYTTGDYRVKTIGGNVKFGVPFSELDRIFFGVGIENTK 120
           PYFTDDG+SRTYEV+LRT+RPS Y TGDYRVKT+GG++KFGVPFSELDR+FFGVG+ENT 
Sbjct: 488 PYFTDDGISRTYEVYLRTVRPSVYATGDYRVKTLGGSIKFGVPFSELDRVFFGVGLENTD 547

Query: 121 VDTDSTSPSLYRQYVRDFGAGGVAGCDVVNDGS-CGVGTASTTSFPLTAAWQRDSRDSAL 179
           V TD+TSP+LYRQYVRDFG  GVAGCDV + G+ CG+G+A TTS PLT AWQRD RDSAL
Sbjct: 548 VSTDTTSPTLYRQYVRDFGGAGVAGCDVTSSGNGCGIGSARTTSIPLTVAWQRDGRDSAL 607

Query: 180 VPTKGRYQRANLELSAVGTLKYYRASYQHQYFQPFWANAATIAFNGEVDYGKGIGGKPYP 239
           VPT GRYQRANLE+S +GTLKYYRASYQHQYFQPF++ A T+A NGEVDYG+GIG KPYP
Sbjct: 608 VPTTGRYQRANLEVSYLGTLKYYRASYQHQYFQPFFSKAVTLALNGEVDYGRGIGSKPYP 667

Query: 240 IFKNYYAGGIGTVRGYEASSLGNLKDQYGDSMGGASRLIGSVELQFPFPGSGQDRSLRWF 299
           +FKNYYAGGIGTVRGYEASSLG+LKDQYGDSMGGASRL G+VELQFPFPGSGQDR+LRWF
Sbjct: 668 VFKNYYAGGIGTVRGYEASSLGSLKDQYGDSMGGASRLYGNVELQFPFPGSGQDRTLRWF 727

Query: 300 TFLDGGNVFADRERIKINDLRYSTGLGISWISPIGPLKLSYGKPLNLKQGDKSQNFQFQL 359
           TF DGGNVFAD + IK NDLRYS G+GISW+SPIGPLKLS+GKPLNLK GDKSQ FQFQL
Sbjct: 728 TFFDGGNVFADGQNIKFNDLRYSAGVGISWVSPIGPLKLSFGKPLNLKTGDKSQTFQFQL 787

Query: 360 GTGF 363
           GTGF
Sbjct: 788 GTGF 791


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,236,840
Number of extensions: 55044
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)