BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0024.p
         (444 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA8...   746   0.0  

>gi|300311501|ref|YP_003775593.1| outer membrane /protective OMA87
           antigen protein [Herbaspirillum seropedicae SmR1]
          Length = 791

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/420 (85%), Positives = 385/420 (91%), Gaps = 1/420 (0%)

Query: 1   MKLHSAHFPAPIFSRSLIAAAALTLCTGQAFAVEPFVVKDIRVEGIQRTEAGTVFSYLPV 60
           MKLH A  P P FSR LIAAAA  LC+ QA AV PFVVKDIRVEGIQRTEAGTVFSYLPV
Sbjct: 1   MKLHPAQHPIPTFSRRLIAAAAFALCSSQAMAVTPFVVKDIRVEGIQRTEAGTVFSYLPV 60

Query: 61  RVGDTFTDEKGTAAIKALYATGFFKDVRVEAEGDVLVVQVEERPAIASVDFSGIKEFDKE 120
           RVGDTFTDEKGTAAIKALYATGFF+DVR+E+EGDVLVVQV ERPAIASVDFSGIKEFDKE
Sbjct: 61  RVGDTFTDEKGTAAIKALYATGFFRDVRIESEGDVLVVQVVERPAIASVDFSGIKEFDKE 120

Query: 121 QLTKALKEIGVAESRIFDKSQVDRAEQELKRQYLSRGLYGAKVTTTITPVERNRVAVTFA 180
           QLTKALKEIGVAESRIFD+SQVDRAEQELKRQYLSRGLYGAKV+TT+TPVERNRVA+TF+
Sbjct: 121 QLTKALKEIGVAESRIFDRSQVDRAEQELKRQYLSRGLYGAKVSTTVTPVERNRVAITFS 180

Query: 181 VDEGDVSRIKQINVVGNKAFSDGTLRDQLKLTTPGWFTWYTKADQYSKQKLAGDIESLRS 240
           VDEGDVSRIKQIN VGNK FSD TLRDQ+KLTTPGWFTWYTKADQYSK+KL GDIE+LRS
Sbjct: 181 VDEGDVSRIKQINFVGNKVFSDSTLRDQIKLTTPGWFTWYTKADQYSKEKLQGDIETLRS 240

Query: 241 YYLDRGYLEMQIESTQVSITPDKKDIYITININEGEKYTVSDIKLDGEMFGMEGDLAGLV 300
           YYLDRGYLEMQ+ESTQVSITPDKKDIYIT+NI EGEKYTVS +KL+GEMFGME +LA LV
Sbjct: 241 YYLDRGYLEMQVESTQVSITPDKKDIYITVNIKEGEKYTVSGVKLEGEMFGMEPELAKLV 300

Query: 301 QLKKGDIYSGSKLTDSTKKISERLGNFGYAFANVNANPNVDREKKEVAFTIMVDPGKRVY 360
           QLK GD+YSG+KLTDSTKKI ERLGNFGYAFANVNANPNVDREKKEVAFTIM+DPGKRVY
Sbjct: 301 QLKAGDVYSGAKLTDSTKKIGERLGNFGYAFANVNANPNVDREKKEVAFTIMIDPGKRVY 360

Query: 361 VRHINIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRA-RASTVSAISRKSPAIAST 419
           VRHINIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDR  R      ++  +P +  T
Sbjct: 361 VRHINIAGNTKTRDEVIRREFRQFEDSWYDGEKIKLSRDRVDRLGYFKEVTLDTPEVPGT 420


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,188,834
Number of extensions: 46198
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 356
Effective length of database: 1,203,190
Effective search space: 428335640
Effective search space used: 428335640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)