BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0023.p
         (384 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311500|ref|YP_003775592.1| membrane-associated Zn-dependen...   582   e-167

>gi|300311500|ref|YP_003775592.1| membrane-associated Zn-dependent
           proteases 1 protein [Herbaspirillum seropedicae SmR1]
          Length = 457

 Score =  582 bits (1500), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 289/382 (75%), Positives = 329/382 (86%), Gaps = 3/382 (0%)

Query: 6   DAREQDVSEMAPEDLKREFTRQSVWRRIAIVAAGPLANFILAILLFAGLFMHGIPEPLPK 65
           DAREQD+ +++  DLKREFTRQSVWRRIAIVAAGP+ANF+LAILLFAGL+MHG+PEP+P 
Sbjct: 74  DAREQDLQDISEADLKREFTRQSVWRRIAIVAAGPIANFLLAILLFAGLYMHGVPEPVPV 133

Query: 66  LRAMAEQSAAYQAGLRGGETITAVNGEPVHAWTEVRWQLMQHVLEKTPARLDVESDAPNG 125
           LRA A QS AYQ+GLR G+ ITA+NG PVH W+EVRW+LMQ VLEK  ARLDVE   PNG
Sbjct: 134 LRAAATQSVAYQSGLRAGDRITAINGAPVHVWSEVRWKLMQLVLEKADARLDVERPNPNG 193

Query: 126 -GKLINTVRLPLDGISTEDLEGDFLAKLGLSLARPKAILGKIMDGPAMQAGLQKGDLILA 184
            GKL+NTV LPL  I+ +DLEGDFLAKLGLSLARP A+LGKIMDGPA  AGLQ GD I A
Sbjct: 194 SGKLLNTVSLPLGSIAADDLEGDFLAKLGLSLARPPAVLGKIMDGPAKTAGLQTGDRITA 253

Query: 185 VNGAPVKDGLALVELVRASPGKPLALHGLRGQSEFHVTVTPDTLTD--NGQTIGRIKVEV 242
           ++GAPV+DGLA VE VR S GKPL L  +RG + F V VTP+++ +  +G+ IGRIKVEV
Sbjct: 254 IDGAPVQDGLAFVETVRESGGKPLTLEAVRGNAPFTVRVTPESVDEEGSGKRIGRIKVEV 313

Query: 243 PLAPEMTVVSDPPWTAITKGAEKTWDTSAMTLKMIGKMIVGQVSWKNITGPITIADYAGQ 302
           PLAPEM  VSD  +TA+ KG  +TWDTS M++KMIGKM++GQVS KNITGPITIADYAGQ
Sbjct: 314 PLAPEMATVSDDIFTALAKGVRRTWDTSVMSIKMIGKMVIGQVSLKNITGPITIADYAGQ 373

Query: 303 TAKVGLVSYLSFIAFISISLGVMNLLPIPVLDGGHLLYYSLEILTGRPVSERFGEIAQRA 362
           TA+VGLVSYLSF+AFISISLGVMNLLPIPVLDGGHLLYY+LEILTGRPVSERFGEIAQRA
Sbjct: 374 TARVGLVSYLSFLAFISISLGVMNLLPIPVLDGGHLLYYALEILTGRPVSERFGEIAQRA 433

Query: 363 GMGILMMLMLVAAFNDIVRLMF 384
           G+GILM LMLVAAFNDIVRLMF
Sbjct: 434 GLGILMALMLVAAFNDIVRLMF 455


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.138    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,240,224
Number of extensions: 54669
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 297
Effective length of database: 1,207,925
Effective search space: 358753725
Effective search space used: 358753725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)