BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0022.p
         (213 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311499|ref|YP_003775591.1| 1-deoxy-D-xylulose 5-phosphate ...   331   2e-92

>gi|300311499|ref|YP_003775591.1| 1-deoxy-D-xylulose 5-phosphate
           reductoisomerase [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  331 bits (849), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 164/212 (77%), Positives = 180/212 (84%)

Query: 1   LTASGGPFLKRAVETLDSVTPDEAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFGAP 60
           LTASGGPFL R V TLD+VT +EAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFGAP
Sbjct: 178 LTASGGPFLTRDVGTLDTVTVEEAVAHPKWVMGRKISVDSATMMNKGLEVIEAHWLFGAP 237

Query: 61  ADRIEVMIHPQSVIHSMVSYIDGSVLAQLGNPDMRTPIANAMAYPERIASGVAQLDLAQI 120
           AD+IEV+IHPQSVIHSMVSY DGSVLAQLGNPDMRTPIANA+AYPERIASGVA LDLAQI
Sbjct: 238 ADKIEVVIHPQSVIHSMVSYADGSVLAQLGNPDMRTPIANALAYPERIASGVAPLDLAQI 297

Query: 121 GQLFFERPDLARFPCLKLAYDALHAGGSSAAILNAANEVAVEAFLNQEIGFRMIDQVIAR 180
            QL F  PD  RFPCLKLAYDAL AGG+ AAILNAANEVAV+AFL + IGF  I  +I  
Sbjct: 298 AQLSFSEPDFQRFPCLKLAYDALRAGGTLAAILNAANEVAVQAFLGRRIGFGKIAPLIDE 357

Query: 181 VMDKLPHGPVTDIDALIEQDKIARSVAQSCLT 212
           VM  +P+    DIDAL+EQD+ ARS A+  ++
Sbjct: 358 VMSAIPNRQADDIDALLEQDRQARSHAEHLIS 389


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 658,066
Number of extensions: 25143
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 132
Effective length of database: 1,236,335
Effective search space: 163196220
Effective search space used: 163196220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)