BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0018.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311498|ref|YP_003775590.1| phosphatidate cytidylyltransfer...   225   1e-60

>gi|300311498|ref|YP_003775590.1| phosphatidate cytidylyltransferase
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  225 bits (574), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/149 (71%), Positives = 128/149 (85%)

Query: 3   FFAAGAWESLRLFRYSRAELWAGFWTVGYAVVVFVSGLPSVRSLFAVCVALWVIRFVPAL 62
           FFAAGAWE  RLF+  R  LWA  WT+ + V++F +G+PSVR L+ +CV LW +RFVPAL
Sbjct: 35  FFAAGAWECFRLFKSPRPTLWAALWTLAFCVILFFTGMPSVRPLYVLCVLLWAVRFVPAL 94

Query: 63  KLGLPPLKTPANRLLSITYTLALLGCFIAIVSLFQHSPLYLLSVMAIVWIADIGAYFAGK 122
            LGLPP+++ ANRLL+ TY L++LGCF+AIV LFQ +PLYLLSVMA+VW+ADIGAYF+GK
Sbjct: 95  GLGLPPVESFANRLLNATYMLSILGCFVAIVDLFQRAPLYLLSVMAVVWVADIGAYFSGK 154

Query: 123 GFGRHKLAPSISPGKSWEGAVGGWLAVLV 151
           GFGRHKLAP+ISPGKSWEGAVGGWLAVLV
Sbjct: 155 GFGRHKLAPTISPGKSWEGAVGGWLAVLV 183


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.142    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 494,111
Number of extensions: 19236
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)