BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0023.0017.p (829 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311497|ref|YP_003775589.1| undecaprenyl pyrophosphate synt... 435 e-123 gi|300311495|ref|YP_003775587.1| uridylate kinase [Herbaspirillu... 304 2e-83 gi|300311494|ref|YP_003775586.1| elongation factor TS [Herbaspir... 292 8e-80 gi|300311496|ref|YP_003775588.1| ribosome recycling factor [Herb... 280 4e-76 >gi|300311497|ref|YP_003775589.1| undecaprenyl pyrophosphate synthetase [Herbaspirillum seropedicae SmR1] Length = 252 Score = 435 bits (1118), Expect = e-123, Method: Compositional matrix adjust. Identities = 203/252 (80%), Positives = 231/252 (91%) Query: 578 MTHKSSTQAVPQVSSVPRHVAIIMDGNGRWATKRFLPRVAGHVKGVDAVRDIVEACSQRG 637 M H+SST AVP+ S+VPRHVAIIMDGNGRWATKRFLPRVAGH KGVDAVR IVEAC++RG Sbjct: 1 MKHQSSTLAVPETSAVPRHVAIIMDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERG 60 Query: 638 IEYLTLFAFSSENWRRPADEVSLLMRLFMTALEREVSKMHANGIRLRVVGDLSRFDAKLQ 697 IE+LTLFAFSSENWRRPADEVS+LMRLFMT LEREV KM ANGIRL++VGD+SRFD KLQ Sbjct: 61 IEFLTLFAFSSENWRRPADEVSVLMRLFMTVLEREVGKMAANGIRLKIVGDMSRFDPKLQ 120 Query: 698 DMVAKAEAQTAGNTRLTLTICANYGGRWDIMQAVGKMLREQPGATDFSEEQLTPHLAMAY 757 +M AKAEAQTA N+RLTLT+CANYGGRWD+MQAV KM++++PG DF+EE+L P+LAMAY Sbjct: 121 EMAAKAEAQTAANSRLTLTVCANYGGRWDVMQAVSKMIKDKPGHADFTEEELAPYLAMAY 180 Query: 758 APEPDLFVRTGGEERISNFLLWQLAYSELYFTETYWPDFDGAELDKAIESYRQRERRFGR 817 APEPDLF+RTGGE+RISNFLLWQLAYSELYFTET+WPDFD LD AI SY+QRERRFGR Sbjct: 181 APEPDLFIRTGGEQRISNFLLWQLAYSELYFTETFWPDFDAKALDLAIASYQQRERRFGR 240 Query: 818 TSEQLVEQKKAS 829 TS Q+++QKKAS Sbjct: 241 TSAQVLDQKKAS 252 >gi|300311495|ref|YP_003775587.1| uridylate kinase [Herbaspirillum seropedicae SmR1] Length = 238 Score = 304 bits (779), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 149/154 (96%), Positives = 153/154 (99%) Query: 238 MTTPAYKRVLLKLSGEALMGDDAYGINRATIERMVADVAEVTQLGVELAIVIGGGNIFRG 297 MTTPAYKRVLLKLSGEALMGDDAYGINRATIERMVADVAE+++LGVELAIVIGGGNIFRG Sbjct: 1 MTTPAYKRVLLKLSGEALMGDDAYGINRATIERMVADVAEISKLGVELAIVIGGGNIFRG 60 Query: 298 VAPGAQGMDRATADYMGMLATVMNSLALADAMRQAGLTARVMSAIAIEQVVEPYVRPKAL 357 VAPGAQGMDRATADYMGMLATVMNSLALADAMRQAGLTARVMSAI IEQVVEPYVRPKAL Sbjct: 61 VAPGAQGMDRATADYMGMLATVMNSLALADAMRQAGLTARVMSAIGIEQVVEPYVRPKAL 120 Query: 358 QYLEEGKVVVFAAGTGNPFFTTDTAAALRGSEIG 391 QYLEEGK+VVFAAGTGNPFFTTDTAAALRGSEIG Sbjct: 121 QYLEEGKIVVFAAGTGNPFFTTDTAAALRGSEIG 154 >gi|300311494|ref|YP_003775586.1| elongation factor TS [Herbaspirillum seropedicae SmR1] Length = 295 Score = 292 bits (747), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 142/173 (82%), Positives = 157/173 (90%), Gaps = 1/173 (0%) Query: 1 MAAITAALVGELRAKTDAPMMECKKALTEAEGDMVRAEEILRVKLGSKASKASSRITSEG 60 MAAITAA+VG+LRAKTDAPMMECKKALTEA+GDM +AEEILRVKLGSKASKASSRIT+EG Sbjct: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 Query: 61 VVATYIAGGVGALVEINCETDFVTKNDEFIALANAVAKVIAEKNPADLAALAALPLGD-K 119 V++TYIAG VGALVE+NCETDFVTKNDEFI L A AK++ E+NPAD+AAL A L D K Sbjct: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 Query: 120 TVEETRTELIGRIGENMSIRRFQRFETTGKLVSYLHGTRIGVVVEFDGADEQV 172 T+EE RTELIGRIGENMS RRFQRFET+ KL SYLHGTRIGV+VEFDGADEQV Sbjct: 121 TLEELRTELIGRIGENMSFRRFQRFETSAKLASYLHGTRIGVIVEFDGADEQV 173 >gi|300311496|ref|YP_003775588.1| ribosome recycling factor [Herbaspirillum seropedicae SmR1] Length = 186 Score = 280 bits (715), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 134/161 (83%), Positives = 151/161 (93%) Query: 395 MRADLAKVRTGRAHTGILDHVQVEYYGSPTQLSQVANLTLIDARTIGVQPFDKKMLAVIE 454 ++A+LAKVRTGRAHTG+LD V V+YYGSPT LSQVANLTLIDARTIGVQP++KKM+AV+E Sbjct: 21 LKANLAKVRTGRAHTGLLDQVMVDYYGSPTGLSQVANLTLIDARTIGVQPYEKKMVAVVE 80 Query: 455 KAIREADLGLNPATQGDLIRVPTPALTEERRKEMVKLVKGEAEDTKISIRNIRRDANESL 514 KAIREADLGLNPAT G+LIRVP P LTEERRKEMVKLVKGEAED KI++RNIRR+ NESL Sbjct: 81 KAIREADLGLNPATHGELIRVPMPPLTEERRKEMVKLVKGEAEDAKIAVRNIRREGNESL 140 Query: 515 KKLVKDKVCSEDDERRGQEDIQKLTDKFVAEVDKLVVEKEK 555 KKLVKDKV SEDDERRGQ++IQKLTDKFVAE+DKLV +KEK Sbjct: 141 KKLVKDKVASEDDERRGQDEIQKLTDKFVAEIDKLVSDKEK 181 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.133 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,395,489 Number of extensions: 98959 Number of successful extensions: 353 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 352 Number of HSP's successfully gapped: 4 Length of query: 829 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 736 Effective length of database: 1,179,515 Effective search space: 868123040 Effective search space used: 868123040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)