BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0013.p
         (453 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311491|ref|YP_003775583.1| PII uridylyltransferase [Herbas...   794   0.0  

>gi|300311491|ref|YP_003775583.1| PII uridylyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 850

 Score =  794 bits (2051), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/440 (85%), Positives = 407/440 (92%), Gaps = 1/440 (0%)

Query: 2   QEKLESLVQLFWDIGLEIGHSIRTIDECMSESAADITVQTSLLEARLVTGNKTLFQLLQV 61
           +EKLESLVQLFWDIGLEIGHSIRTIDEC+ ESAADITVQTSLLEARLVTG++ LF+ LQ 
Sbjct: 91  KEKLESLVQLFWDIGLEIGHSIRTIDECLDESAADITVQTSLLEARLVTGSRALFKQLQE 150

Query: 62  KCQAAMDPRAFFLAKTLELRQRHVKYEDTPYSLEPNCKESPGGLRDLQVILWVAKAAGLG 121
           + QAA+DP AFF AKTLE+RQRHVKYEDTPYSLEPNCKESPGGLRDLQVILWVAKAAGLG
Sbjct: 151 RYQAALDPLAFFQAKTLEMRQRHVKYEDTPYSLEPNCKESPGGLRDLQVILWVAKAAGLG 210

Query: 122 DSWSKLAQRGLLTATEARQLTQKERAFKDIRIRLHIYTNRREDRLVFDIQTPIAESFGFK 181
            SWS+LA+ G+LT+TEARQL QKERAFKDIRIRLHI T+RREDRLVFDIQT IAE+FGFK
Sbjct: 211 HSWSELAEHGMLTSTEARQLRQKERAFKDIRIRLHILTDRREDRLVFDIQTQIAETFGFK 270

Query: 182 STDTRRASEYLMQRYYWAAKAVTQLNTILLQNIEAQLFPQDVIPQKINERFNELNGFLDI 241
           +TDTRRASEYLMQRYYWAAKAVTQLNTILLQNIEA LFPQ  +P++INERFNE+NGF+DI
Sbjct: 271 TTDTRRASEYLMQRYYWAAKAVTQLNTILLQNIEAHLFPQQAVPRQINERFNEVNGFVDI 330

Query: 242 AHDNVFEDTPSAMLEVFLVLAQH-HVIGXGARTMRALWHARFKIDNAFRADPANHALFMQ 300
           AHD+VFE+TPSAMLEVFLVL+QH  +    ARTMRALWHARFKIDNAFR +P NH LFMQ
Sbjct: 331 AHDHVFEETPSAMLEVFLVLSQHAELKDMSARTMRALWHARFKIDNAFRNNPENHRLFMQ 390

Query: 301 ILQGKRGIMHALRRMNQTSVLGRYLPNFRRIVGQMQHDLFHVYTVDQHILMVVRNVRRFT 360
           ILQ KRGI HALRRMN TSVLGRYLPNFR+IVGQMQHDLFHVYTVDQHILMVVRNVRRFT
Sbjct: 391 ILQSKRGITHALRRMNATSVLGRYLPNFRQIVGQMQHDLFHVYTVDQHILMVVRNVRRFT 450

Query: 361 MSEHAHEYPFCSQLMANFAQPWILYVAALFHDIAKGRGGDHSKLGMADARQFCVQHGISE 420
           MSEHAHEYPFCSQLMANFAQPW+LYVAALFHDIAKGRGGDHSKLGMADAR FCVQHGIS 
Sbjct: 451 MSEHAHEYPFCSQLMANFAQPWVLYVAALFHDIAKGRGGDHSKLGMADARAFCVQHGISP 510

Query: 421 ANTELVVFLVEHHLTMSQVA 440
            NT+L+VFLVE HL MS VA
Sbjct: 511 ENTDLIVFLVEQHLAMSHVA 530


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,261,483
Number of extensions: 48448
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 365
Effective length of database: 1,203,190
Effective search space: 439164350
Effective search space used: 439164350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 132 (55.5 bits)