BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0012.p
         (316 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311491|ref|YP_003775583.1| PII uridylyltransferase [Herbas...   580   e-167

>gi|300311491|ref|YP_003775583.1| PII uridylyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 850

 Score =  580 bits (1494), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 274/316 (86%), Positives = 294/316 (93%)

Query: 1   LSDPDVIQQFADSVKDERHLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRMTLRVLGG 60
           +SDPDVI  FA  VKDERHLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRMTLRVLGG
Sbjct: 535 MSDPDVITAFAQLVKDERHLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRMTLRVLGG 594

Query: 61  EAPSADRELKNTQQEAIKTLRLYGLPADAHENFWRQLDVAYFLRLDASDIAWQTRSFYDK 120
           E PSADRELKNTQQEAIKTLRLYGLPADAHE  W+QLDVAYFLR DASDIAWQTR F+DK
Sbjct: 595 EEPSADRELKNTQQEAIKTLRLYGLPADAHEQLWKQLDVAYFLRHDASDIAWQTRCFFDK 654

Query: 121 MDSKVPLVKCRLAPIGEGVQVAVYTPDQPDLFARICSYFDEKNFSILDAKIHTTKTNYAL 180
           +D+ VPLV+CRLAPIGEGVQVAVYTPD+ DLFARICSYFDEK+FSI DAKIHTT+ NYAL
Sbjct: 655 VDTAVPLVRCRLAPIGEGVQVAVYTPDRQDLFARICSYFDEKSFSIFDAKIHTTRNNYAL 714

Query: 181 DAFLISAPVFAKNYRDIINLIEHELAHLLQSDSPLPAPAKGRLSRLSRTFPINPSVDLRP 240
           DAFLI+APVFAKNYRDIINLIEHEL  LLQS+ PLPAP+K RLSRLSRTFP+NP+VDLRP
Sbjct: 715 DAFLINAPVFAKNYRDIINLIEHELGALLQSEEPLPAPSKARLSRLSRTFPVNPAVDLRP 774

Query: 241 DERGQYYLLSVSANDRNGLLYTISNILAKYKINLHTAKVMTLGERVEDVFLVDGAALNHP 300
           DERGQYYLLS+SANDR GLLY+ISN+LAKYKINLHTAKVMTLGERVEDVFL+DG  L+ P
Sbjct: 775 DERGQYYLLSISANDRAGLLYSISNVLAKYKINLHTAKVMTLGERVEDVFLIDGPGLSQP 834

Query: 301 RNQIMLETDLLKALRI 316
           RNQI+LETDLLK LRI
Sbjct: 835 RNQILLETDLLKTLRI 850


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 981,782
Number of extensions: 40449
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,217,395
Effective search space: 281218245
Effective search space used: 281218245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)