BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0006.p
         (311 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311488|ref|YP_003775580.1| multidrug ABC transporter ATPas...   368   e-103

>gi|300311488|ref|YP_003775580.1| multidrug ABC transporter
           ATPase/permease [Herbaspirillum seropedicae SmR1]
          Length = 758

 Score =  368 bits (945), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/279 (69%), Positives = 218/279 (78%), Gaps = 7/279 (2%)

Query: 23  MNRESLIPSSSNLPAPWRAEAQAQLAPDEKIVTWLELDLDTALKFSSGLIVATDRRLLAK 82
           M  +SL  + ++LP  W+ E  A+LA  E ++ WLELDLD  L+F+  L++ATDRRLLA 
Sbjct: 1   MTTDSLPSAHTSLPERWQTEIAARLAAGETVLAWLELDLDAQLQFNRSLVLATDRRLLAS 60

Query: 83  NSENQGWSTWEYRAGLALKHHDHAGVGSLELQDGQSRLAFWRYTLAQNPQALRLINQFDQ 142
               Q W  W YR  L LKHHDHAGVG+LEL DG  RLA WRYTL+QNPQALRLI  F+Q
Sbjct: 61  PPAGQAWQEWAYRPDLQLKHHDHAGVGTLELCDGAGRLAAWRYTLSQNPQALRLIKLFEQ 120

Query: 143 QRDAQASGQAAVEEALDVCPQCKAPIPQGQEACAICPEAKEAPPSTWALFRLTRFAKPYK 202
           QRD  ASG  A EE  DVCP CKA +P+GQE CAICPE KEAPPSTWALFRL+RFAKPYK
Sbjct: 121 QRDLLASGVQAEEEG-DVCPNCKAVLPEGQETCAICPETKEAPPSTWALFRLSRFAKPYK 179

Query: 203 GSLLLGFLLTLASTAATLVPPYMTMPLMDNVLIPFQNGAPLDSRLAGLYLSGLLGSAMVA 262
           GSLLLGFLLTLASTAATLVPPYMTMPLMDNVLIPFQNGAP+D+ LA LYLSGLLG+A++A
Sbjct: 180 GSLLLGFLLTLASTAATLVPPYMTMPLMDNVLIPFQNGAPIDTHLATLYLSGLLGAAVLA 239

Query: 263 WILGWARTYILALVSERIGADLRCFXF------RQEHHG 295
           W LGWARTYILALVSERIGADLR   +       QE+ G
Sbjct: 240 WGLGWARTYILALVSERIGADLRTTTYSHLLRLSQEYFG 278


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 902,215
Number of extensions: 33513
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 226
Effective length of database: 1,217,395
Effective search space: 275131270
Effective search space used: 275131270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)