BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0004.p
         (226 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbasp...   285   2e-78
gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbasp...   157   5e-40

>gi|300311486|ref|YP_003775578.1| cyanophycin synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 732

 Score =  285 bits (730), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 138/166 (83%), Positives = 150/166 (90%)

Query: 1   MVDSLCLGPSTACIVDAADERRIPSIRLSEGNLVQLGHGCKQRRIWTAETDQTSAIAESI 60
           MVD LCLGPSTACIVDAADERRIP+IRLSEGNLVQLGHGCK RRIWTAE+DQTSAIAE I
Sbjct: 155 MVDRLCLGPSTACIVDAADERRIPTIRLSEGNLVQLGHGCKSRRIWTAESDQTSAIAEGI 214

Query: 61  SRDKDLTKTLLQSCGVAIPEGRIVDSPADAWEAAEDIGLPVVVKPSDANHGRGVFIDLNT 120
           SRDKDLTK+LL++CGV +PEGR+V+SP DAWEAA+DIGLPVVVKP DANHGRGVFIDLNT
Sbjct: 215 SRDKDLTKSLLETCGVPVPEGRLVESPEDAWEAAQDIGLPVVVKPCDANHGRGVFIDLNT 274

Query: 121 QAEVETAYKAALEEGSSVLVERFIRGNEHRLLIVGGKLAAXHHRHP 166
           + E+ETAYK ALEEGS VLVERF+ G EHRLLIVGGKLAA     P
Sbjct: 275 REEIETAYKVALEEGSGVLVERFVPGLEHRLLIVGGKLAAAARGEP 320


>gi|300311485|ref|YP_003775577.1| cyanophycin synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 857

 Score =  157 bits (398), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 113/162 (69%)

Query: 7   LGPSTACIVDAADERRIPSIRLSEGNLVQLGHGCKQRRIWTAETDQTSAIAESISRDKDL 66
           LGPST  IV+AA +R IP  RL++G++VQ G G +Q+RI  AET  TSAIAESI++DKDL
Sbjct: 148 LGPSTGSIVNAAIKRGIPFRRLTQGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQDKDL 207

Query: 67  TKTLLQSCGVAIPEGRIVDSPADAWEAAEDIGLPVVVKPSDANHGRGVFIDLNTQAEVET 126
           TK LL + GV +P GR+V++  DA +AAE+IG  VV+KP D N G+GV ++++T  ++  
Sbjct: 208 TKMLLHAAGVPVPNGRVVETVEDALKAAEEIGSAVVIKPLDGNQGKGVAVNISTPEQITR 267

Query: 127 AYKAALEEGSSVLVERFIRGNEHRLLIVGGKLAAXHHRHPRQ 168
           A+  A      V+VER++ G++ RLL++G  L A   R P Q
Sbjct: 268 AFNNAALISDEVIVERYLPGHDFRLLVIGKTLVAAARRDPPQ 309


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 561,307
Number of extensions: 19718
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,231,600
Effective search space: 177350400
Effective search space used: 177350400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)