BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0023.0002.p
         (245 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311485|ref|YP_003775577.1| cyanophycin synthetase [Herbasp...   373   e-105
gi|300311486|ref|YP_003775578.1| cyanophycin synthetase [Herbasp...   169   3e-43

>gi|300311485|ref|YP_003775577.1| cyanophycin synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 857

 Score =  373 bits (958), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/202 (91%), Positives = 190/202 (94%)

Query: 27  QMVGLDICGVDIVCNTVHAPLEEQEGGIVEVNAAPGLRMHLSPSYGKGRAVGDAIISTMF 86
           QMVGLDICGVD+VCN+VH  LEEQ GGIVEVNAAPGLRMHLSPSYGK R VG+AI+STM+
Sbjct: 403 QMVGLDICGVDVVCNSVHMSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIVSTMY 462

Query: 87  ADGDDARIPVVAVAGTNGKTTTVRLITHLLAQKGLRVGMTNTDGVYIDNQRTDTGDCSGP 146
            DGDD RIPVVAVAGTNGKTTTVRLITHLLA+ GLRVGMTNTDGVYID QRTDTGDCSGP
Sbjct: 463 EDGDDGRIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGP 522

Query: 147 RSARNVLFHPDVDAAVLETARGGVLREGLGFDRCNVAVVTNIGMGDHLGLSYISTVEDLA 206
           RSARNVLFHPDVDAAVLETARGGVLREGLGFDRC VAVVTNIGMGDHLGLSYISTVEDLA
Sbjct: 523 RSARNVLFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLA 582

Query: 207 VVKRVIVENVASTGYAVLNAAD 228
           VVKRVIVENVA TG AVLNAAD
Sbjct: 583 VVKRVIVENVAPTGTAVLNAAD 604


>gi|300311486|ref|YP_003775578.1| cyanophycin synthetase
           [Herbaspirillum seropedicae SmR1]
          Length = 732

 Score =  169 bits (427), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 95/203 (46%), Positives = 123/203 (60%), Gaps = 1/203 (0%)

Query: 27  QMVGLDICGVDIVCNTVHAPLEEQEGGIVEVNAAPGLRMHLSPSYGKGRAVGDAIISTMF 86
           ++VGLDI GVDIV   +  PL++Q G IVEVNA PGL MHL PS GK R VG+AII  +F
Sbjct: 413 RIVGLDIAGVDIVAEDISRPLQDQGGAIVEVNAGPGLLMHLKPSDGKPRPVGEAIIDNLF 472

Query: 87  ADGDDARIPVVAVAGTNGKTTTVRLITHLLAQKGLRVGMTNTDGVYIDNQRTDTGDCSGP 146
              ++ RIP+V V GT+GKTT  RLI  ++   G  VG+   +G+Y   ++ + G+ +  
Sbjct: 473 GPEENGRIPIVGVTGTHGKTTIARLIARIVHLSGKHVGLACGEGLYFGERQIERGNRANW 532

Query: 147 RSARNVLFHPDVDAAVLETARGGVLREGLGFDRCNVAVVTNIGMGDHLGLSYISTVEDLA 206
            +A  VL +  V+AAV E     +L EGL +DRC V VV NI   D L   YI   E +A
Sbjct: 533 DAAHRVLLNRAVEAAVFENGSAAILAEGLAYDRCLVGVVANIDPNDSLPEFYIENAEQIA 592

Query: 207 V-VKRVIVENVASTGYAVLNAAD 228
             VKR  V+ V   G AVLNA D
Sbjct: 593 TKVKRTQVDLVLPDGAAVLNADD 615


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 735,360
Number of extensions: 31391
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 2
Length of query: 245
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,226,865
Effective search space: 198752130
Effective search space used: 198752130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)