BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0014.p (107 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312442|ref|YP_003776534.1| hypothetical protein Hsero_3142... 209 4e-56 gi|300312140|ref|YP_003776232.1| transcription regulator protein... 152 6e-39 gi|300313139|ref|YP_003777231.1| hypothetical protein Hsero_3845... 67 4e-13 gi|300312139|ref|YP_003776231.1| hypothetical protein Hsero_2831... 66 5e-13 gi|300312176|ref|YP_003776268.1| Rhizobium etli IscN protein [He... 58 2e-10 >gi|300312442|ref|YP_003776534.1| hypothetical protein Hsero_3142 [Herbaspirillum seropedicae SmR1] Length = 107 Score = 209 bits (532), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 99/107 (92%), Positives = 104/107 (97%) Query: 1 MAITLTEKAAKHISRYMERRGKGLGLRLGVRTTGCSGLAYKLEYVDEETPEDQVFESRGI 60 MAITLTEKAAKHISRYMERRGKG+GLRLGVRTTGCSGLAYKLEYVDE++ ED VFES G+ Sbjct: 1 MAITLTEKAAKHISRYMERRGKGIGLRLGVRTTGCSGLAYKLEYVDEQSSEDTVFESHGV 60 Query: 61 RVFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNMKDECGCGESFRI 107 RVFVDPKSLPYIDGTELDFAREGLNEGFKFQNPN+KDECGCGESFRI Sbjct: 61 RVFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNVKDECGCGESFRI 107 >gi|300312140|ref|YP_003776232.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 106 Score = 152 bits (384), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 67/107 (62%), Positives = 84/107 (78%), Gaps = 1/107 (0%) Query: 1 MAITLTEKAAKHISRYMERRGKGLGLRLGVRTTGCSGLAYKLEYVDEETPEDQVFESRGI 60 M+ITLTE AA+ + ++ +R +GLRL V+T+GCSG+AY LEY D P+D FES G+ Sbjct: 1 MSITLTENAARRVHAFLAKR-SAVGLRLAVKTSGCSGMAYALEYADVAEPQDVRFESHGV 59 Query: 61 RVFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNMKDECGCGESFRI 107 V +DPKSLPY+DGTELDF REGLNEGFKF NPN K++CGCGESF + Sbjct: 60 TVLIDPKSLPYLDGTELDFVREGLNEGFKFNNPNAKNQCGCGESFAV 106 >gi|300313139|ref|YP_003777231.1| hypothetical protein Hsero_3845 [Herbaspirillum seropedicae SmR1] Length = 121 Score = 66.6 bits (161), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 1/106 (0%) Query: 3 ITLTEKAAKHISRYMERRGK-GLGLRLGVRTTGCSGLAYKLEYVDEETPEDQVFESRGIR 61 I ++ AA +++ +E G L LR+ V+ GCSG Y + + +D G++ Sbjct: 16 INFSDSAAAKVAQLIEEEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMSKNGVQ 75 Query: 62 VFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNMKDECGCGESFRI 107 + +D S Y+ G E+D+ + F +NPN CGCG SF + Sbjct: 76 LLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFSV 121 >gi|300312139|ref|YP_003776231.1| hypothetical protein Hsero_2831 [Herbaspirillum seropedicae SmR1] Length = 118 Score = 66.2 bits (160), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 5/108 (4%) Query: 3 ITLTEKAAKHISRYMERRGKG-LGLRLGVRTTGCSGLAYKLEYVDEETPEDQVFESRGIR 61 + T+ A +S + G L LR+ V GCSG Y + D +D E G+ Sbjct: 13 LIFTDSAVAKVSELISEEGNTELKLRIYVSGGGCSGFEYGFAFDDAVNEDDFCIERNGVS 72 Query: 62 VFVDPKSLPYIDGTELDFAREGLNEGFKF--QNPNMKDECGCGESFRI 107 + VD S+ Y++G E+ + EGL EG +F +NPN CGCG SF + Sbjct: 73 LLVDAMSMQYLNGAEIGY-EEGL-EGSRFIIKNPNATTTCGCGSSFSV 118 >gi|300312176|ref|YP_003776268.1| Rhizobium etli IscN protein [Herbaspirillum seropedicae SmR1] Length = 124 Score = 57.8 bits (138), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 3/103 (2%) Query: 1 MAITLTEKAAKHISRYMERRGKGL--GLRLGVRTTGCSGLAYKLEYVDEETPEDQVFESR 58 M IT+T A K + R + G G RL V GCSGL+ + + TP D + Sbjct: 1 MNITITPAAEKFMRRMVRFNGGSAQSGFRLQVSAGGCSGLSSEFSVQAQPTPGDVSLDCN 60 Query: 59 GIRVFVDPKSLPYIDGTELDFAREGLNEGFKFQNPNM-KDECG 100 G+ VF+ +S ++G +DFA G F+NPN CG Sbjct: 61 GLAVFLPAESRLLLEGVTIDFADTLSESGLTFRNPNAPAASCG 103 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.140 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 272,684 Number of extensions: 8709 Number of successful extensions: 19 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 19 Number of HSP's successfully gapped: 5 Length of query: 107 Length of database: 1,619,870 Length adjustment: 72 Effective length of query: 35 Effective length of database: 1,278,950 Effective search space: 44763250 Effective search space used: 44763250 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)