BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0013.p
         (94 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312443|ref|YP_003776535.1| FeS cluster assembly scaffold p...   172   6e-45
gi|300312138|ref|YP_003776230.1| Fe-S cluster formation NifU fam...   150   2e-38

>gi|300312443|ref|YP_003776535.1| FeS cluster assembly scaffold
           protein [Herbaspirillum seropedicae SmR1]
          Length = 132

 Score =  172 bits (435), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 88/93 (94%), Positives = 90/93 (96%), Gaps = 1/93 (1%)

Query: 1   MKLQIKVGDDGVILDAKFKTYGCGSAIASSSLVTEWVKGKTLDQALSIKNTQIAEELALP 60
           MKLQIKVG DGVI DAKFKTYGCGSAIASSSLVTEWVKGKTLD+ALSIKNTQIAEELALP
Sbjct: 41  MKLQIKVGADGVIQDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALSIKNTQIAEELALP 100

Query: 61  PVKIHCSILAEDAIKAAVQDYKAKHGSVEQKAA 93
           PVKIHCSILAEDAIKAAVQDYKAKHG+ EQKAA
Sbjct: 101 PVKIHCSILAEDAIKAAVQDYKAKHGA-EQKAA 132


>gi|300312138|ref|YP_003776230.1| Fe-S cluster formation NifU family
           protein [Herbaspirillum seropedicae SmR1]
          Length = 149

 Score =  150 bits (379), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/97 (77%), Positives = 85/97 (87%), Gaps = 3/97 (3%)

Query: 1   MKLQIKVGDDGVILDAKFKTYGCGSAIASSSLVTEWVKGKTLDQALSIKNTQIAEELALP 60
           MKLQIKV  +G+I DAKFKTYGCGSAIASSSLVTEW+KG+TLDQAL IKNT IA+ELALP
Sbjct: 41  MKLQIKVDHNGIIEDAKFKTYGCGSAIASSSLVTEWLKGRTLDQALDIKNTAIADELALP 100

Query: 61  PVKIHCSILAEDAIKAAVQDYKAKHGS---VEQKAAA 94
           PVKIHCSILAEDAIKAAV DY+++H +   V+Q A A
Sbjct: 101 PVKIHCSILAEDAIKAAVADYRSRHDAAPEVQQAAPA 137


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 251,866
Number of extensions: 7545
Number of successful extensions: 15
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 2
Length of query: 94
Length of database: 1,619,870
Length adjustment: 63
Effective length of query: 31
Effective length of database: 1,321,565
Effective search space: 40968515
Effective search space used: 40968515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 123 (52.0 bits)