BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0008.p
         (420 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313077|ref|YP_003777169.1| coenzyme F420-dependent N5,N10-...   191   1e-49
gi|300312181|ref|YP_003776273.1| coenzyme F420-dependent N5,N10-...    71   2e-13

>gi|300313077|ref|YP_003777169.1| coenzyme F420-dependent
           N5,N10-methylene tetrahydromethanopterin reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score =  191 bits (485), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 112/250 (44%), Positives = 151/250 (60%), Gaps = 5/250 (2%)

Query: 21  LSVLDQAPVSEGMSSAQALRNSLDLAVLADRLGYYRYWVAEHHGTQSLACASPEVLIGPI 80
            SVLD +P+++G ++AQA  NS +LA  A+ LGY+RYW+AEHH    +A A+  ++I  +
Sbjct: 4   FSVLDLSPINQGSTAAQAFNNSKELAQRAEALGYHRYWLAEHHNMPGIASAATALVISHV 63

Query: 81  AAATSRLRVGSGGVMLPHYSPLKVAESFSMLSGLYPGRIDLGLGRAPGSDSLTASALQRD 140
           AA T  +RVGSGG+MLP++SPL +AE F  L  LYPGRIDLGLGRAPGSD  TA AL+R 
Sbjct: 64  AANTRSIRVGSGGIMLPNHSPLVIAEQFGTLESLYPGRIDLGLGRAPGSDQRTARALRRH 123

Query: 141 RRQRPQDDFPEQLNELLAYLWQELPEDHPFARLPAMPGSPELVQPWMLGSSPQSGIWAAE 200
                 D FP+ + EL  Y   + P D  +  L A+PG+   V  W+LGSS  S   AAE
Sbjct: 124 MGGDTADTFPQDVQELQDYF--DDPAD--YQTLRAVPGAGLKVPIWLLGSSMFSAQLAAE 179

Query: 201 LGMPYMFAD-FIQAAGETVAARYRRDFVPSPHWPDARQGVALQVICAETDEEAKLLATSY 259
           LG+P+ FA  F     ++    YR  F PS         +AL V  A+T  EA+ L TS 
Sbjct: 180 LGLPFAFASHFAPGFMKSAVQIYRERFKPSATLKKPYVMLALNVFAADTQREAERLFTSL 239

Query: 260 GMRLIHMHSG 269
             + +++  G
Sbjct: 240 QQQFMNLIRG 249


>gi|300312181|ref|YP_003776273.1| coenzyme F420-dependent
           N5,N10-methylene tetrahydromethanopterin reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 56/88 (63%)

Query: 38  ALRNSLDLAVLADRLGYYRYWVAEHHGTQSLACASPEVLIGPIAAATSRLRVGSGGVMLP 97
           AL  ++D AV+A+ LGY+  WVAEHH +     ++  VL+  IAA TSR+R+G+G  +L 
Sbjct: 24  ALLQTVDHAVVAEALGYHDVWVAEHHYSSFAIGSALMVLLAQIAARTSRIRLGTGASLLA 83

Query: 98  HYSPLKVAESFSMLSGLYPGRIDLGLGR 125
              PL+VAE  + L  L  GR++ G+ R
Sbjct: 84  LNDPLRVAEDVATLDLLSNGRMEFGVAR 111


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,237,377
Number of extensions: 50886
Number of successful extensions: 162
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 2
Length of query: 420
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 332
Effective length of database: 1,203,190
Effective search space: 399459080
Effective search space used: 399459080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)